Zvit004647.1
Basic Information
- Insect
- Zaprionus vittiger
- Gene Symbol
- -
- Assembly
- GCA_018904025.1
- Location
- JAEIFQ010000344.1:4900572-4907179[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.2e-09 5.1e-06 25.9 0.0 16 40 342 368 338 371 0.84 2 4 3.2e-14 7.3e-11 41.5 0.1 2 39 383 420 382 423 0.94 3 4 5.6e-18 1.3e-14 53.5 0.0 1 45 437 482 437 482 0.98 4 4 3.6e-20 8.3e-17 60.5 0.0 1 43 489 532 489 534 0.96
Sequence Information
- Coding Sequence
- ATGATTTTAGGTCTGTTACGCACTGCGGAACAATTGAAAATCAAAGGACTCTGCGAGCCGGCTGAGAATGCTGATGATCTGAATGACGCTGCATCTGCGACGATAACCGTGTCGGAGAACATACAGCAGGCAGTGGTTGGGAACATTGTGAACGCGAGTCTTGTGCCCGTTATTCAGGGACAAAATCAAACATCTATCGTGAGTCTGCAGCAAACAGCCGACGGCAATTATATACCCGTTACATCTGGGGACGATTCCGATAGCGATAATAAACCGCAAAAGATCTGCAAAACAGAACAATCGGTGGCCTCGCCGGCATCCACATCGTCCACATCGAATAATGCCGCTGCTGGCGTGAGCGGCCAAGCGATTGTGACACAAATTGTAGTAGCGCGCGACGGAAAAGATAATAAAATGACTAGTTTAGGCATGGGCATGAACGGCGGTCTGTTGGGCGTGCCCATGGGCTTTCTGGACTTCACACCGGAACCACCAGCACCATCGGCCACACCAGTTACCGTAACGGAACACGTCGATTTATCGTGCAACCCCAGCACTGATACACGCGATCTATCAAATCCCACCGAACCGCTCGACATAGACAATCATTTGGCTCAGCAAATTCATCGGCTCGATCAATCTCCCATGCACTCGATAGCGCATCATCATACGACCGGCGACGAGAGCAACTCGAATCTGGTGCAGCACATCAAAAGCGAAATTGATCCGAGCCAGATCAAACACGAGCCGGGCATGATTATAACGCCAGAGATTGTCAATATGATGTCCACTGGGCATATGGATATGTACAACTCGGATACGAGCGAGGATTCGATGATGATTGCCAACGGTTCGCCGCACGATCAAAATGAACCGCACTATACGAATTTGGATCAGCAACACGGCGGCTTGGGTGGCAGTGTTTGTGGCCCCGGCGCCGGTGGTGTTGGTGGTGGTGGTGGCGGTGGCGGCATTGGTAGTGGTGGTGGTGGTAATGCTGGCGAGAAAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATACCCTCGACAACATTATGGCAACGTGCACATCGTCTGGGCATCGAAACGCCCAAGAAGGAGGGCGGTACCAAATCATGGAATGAGGATGCCTTACAGAGTGCACTGGAGGCATTGAGATCGGGCCAGATATCAGCTAATAAAGCATCCAAAGCGTTTGGTATACCCTCATCGACGCTCTACAAGATAGCGCGTCGGGAGGGCATACGGCTGGCGGCGCCATTCAATGCCGCACCAACCACGTGGACACCCGAGGATTTGGAGCGTGCATTGGAGGCGATACGTGCTGGCAATACGTCGGTGCAAAAAGCGAGTGCCGAATTTGGCATACCAACAGGAACACTCTATGGACGCTGCAAACGGGAGGGCATCGAACTTTCACGTTCGAATCCAACACCTTGGTCCGAAGATGCCATGAACGAGGCATTGAACTCAGTGCGCGTTGGCCAGATGTCCATCAATCAGGCGGCCATACACTACAACCTGCCCTACAGTTCGCTCTACGGGCGCTTCAAGCGGGGCAAATATGATGTGGCCAACGTCAGCGGAGTCTCGTTGCTTAACGCTTCGGGCAACACCACCGGCAGCATTGAGATTATTGAACATAGTCAGGAGAACTCGTTGCATATGTTGCAGCAACAGTTCCCGTACATCCACGCGAACGTCAACGTCAACGTCAAAGCCAACACCGACGCCACCGCCGCCATTAAATTTCGCTTCAATTCGAAACATTGGAAGCGCAAGCTGAAACAGTTTCACTTGCTGGTGTCGAAGCCCACTTGA
- Protein Sequence
- MILGLLRTAEQLKIKGLCEPAENADDLNDAASATITVSENIQQAVVGNIVNASLVPVIQGQNQTSIVSLQQTADGNYIPVTSGDDSDSDNKPQKICKTEQSVASPASTSSTSNNAAAGVSGQAIVTQIVVARDGKDNKMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIAHHHTTGDESNSNLVQHIKSEIDPSQIKHEPGMIITPEIVNMMSTGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGLGGSVCGPGAGGVGGGGGGGGIGSGGGGNAGEKDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQSALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVANVSGVSLLNASGNTTGSIEIIEHSQENSLHMLQQQFPYIHANVNVNVKANTDATAAIKFRFNSKHWKRKLKQFHLLVSKPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00587315;
- 90% Identity
- iTF_01551650;
- 80% Identity
- -