Basic Information

Insect: Zaprionus nigranus
Gene Symbol: su(Hw)
Assembly: GCA_018903425.1
Location: JAEIGD010000001.1:1325398-1328496[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00057 0.052 14.3 2.2 1 20 194 213 194 215 0.94

2 12 2.4e-06 0.00021 21.8 0.4 3 23 266 287 264 287 0.93

3 12 0.008 0.73 10.6 0.1 1 23 293 315 293 315 0.97

4 12 4.6e-07 4.2e-05 24.0 2.4 1 21 322 342 322 343 0.95

5 12 2.8e-06 0.00025 21.5 0.6 2 23 355 376 354 376 0.96

6 12 8.9e-05 0.0081 16.8 5.3 1 23 387 409 387 409 0.99

7 12 6.9e-05 0.0063 17.2 0.9 1 23 415 437 415 437 0.97

8 12 1.4e-05 0.0013 19.3 0.8 1 23 443 465 443 465 0.99

9 12 1.3e-06 0.00011 22.6 3.0 1 23 471 493 471 493 0.98

10 12 4.7e-05 0.0042 17.7 1.5 1 23 497 519 497 519 0.97

11 12 0.00043 0.039 14.7 0.1 1 21 527 547 527 551 0.92

12 12 7.7e-05 0.0069 17.0 0.3 3 23 571 592 569 592 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00057	0.052	14.3	2.2	1	20	194	213	194	215	0.94
2	12	2.4e-06	0.00021	21.8	0.4	3	23	266	287	264	287	0.93
3	12	0.008	0.73	10.6	0.1	1	23	293	315	293	315	0.97
4	12	4.6e-07	4.2e-05	24.0	2.4	1	21	322	342	322	343	0.95
5	12	2.8e-06	0.00025	21.5	0.6	2	23	355	376	354	376	0.96
6	12	8.9e-05	0.0081	16.8	5.3	1	23	387	409	387	409	0.99
7	12	6.9e-05	0.0063	17.2	0.9	1	23	415	437	415	437	0.97
8	12	1.4e-05	0.0013	19.3	0.8	1	23	443	465	443	465	0.99
9	12	1.3e-06	0.00011	22.6	3.0	1	23	471	493	471	493	0.98
10	12	4.7e-05	0.0042	17.7	1.5	1	23	497	519	497	519	0.97
11	12	0.00043	0.039	14.7	0.1	1	21	527	547	527	551	0.92
12	12	7.7e-05	0.0069	17.0	0.3	3	23	571	592	569	592	0.96

Sequence Information

Coding Sequence: ATGACAGACACAGCGGCCAGTACGACAGCAGCTGTGATCGAGATCGTCGACGTTGCAAAAATCGCGGCGCCCCCTAAGGAGAAACGAACGGGTGCACGCATGAAGCTACTAAACGATCTGCAGCCCAAGGGAAGCGGCAAATCCTCCGTGAAGCAGGAGAAACGCACAAGCATCAAAATACTCAACAACAACGATGAGGCCACAACGGGATCAGGAACTCCCAAACCCGATCGCCGATCTACTGGAAAGACTTCTCTTAGCTCCTCTAGTCCCGCAGGCAGTGTCAAGATTTTAAATGAAAAGCGAGCAGCTCCTGCTGCCAGCACTCCCGTGGAGACGGCAAAGATAAAGACATCGCCGAGCAAGAAAAAGAAAATGGATCATTATGTGCTGCAGGCCATAAAGAGCGAGAACAGCGCCAAGGTGGATAACAAAACGTCGGAGGGCAACGACGATGAGTTTGTTGTCTCTGGCGTCGAGGAAGACGATGACGAGGATGACGATGGCGACGATACATTGGGCGAGGGCAGTGTTAATCGCACCAGCGGCACCAATAGTGACCTCAAGGAGATGGTGGAGCATGTGTGCGGTAAATGCTACAAGACATTCCGTCGCGTCAAGAGTCTGAAGAAACATCTTGAGTTCTGTCGCTATGACAGTGGTTATCACCTGCGCAAGGCGGACATGCTTAAGAATCTGGAGAAGATCGAAAAGGATGCGGTTGTAATGGAGAAGAAAGACATATGCTTCTGCTGCAGCGAGAGTTACGACACCTTCCATTTGGGCCACATTAACTGTCCGGATTGCCCCAAGTCGTTTAAGACTCAGACTAGCTATGAACGTCACATCTTCATCACCCACTCGGAGTTTAGTGACTACCCCTGCTCCATTTGCAATGCAAAACTGCGCAGCGCTGCCCTGCTAAAGCTGCACGAGCAGCAGCATCAGTCGCGAGGCAAACCCTATGCGTGCAAGATCTGTGGCAAAGATTTCACACGCTCCTATCACCTGAAGCGCCATCAAAAGTACTCGTCGTGCTCGGCCAATGAGAACGACACTATGAGCTGCAAGGTATGCGATCGTGTCTTCTATCGCTTGGACAATTTACGTGCGCATCTCAAGCAGCATCTGGGCACGCAGGTGGTCAAGAAACCGGAGTATATGTGCCATGTATGCAAGAACTGTTTCTACAGTCTCTCGACGCTCAACATACACATACGCACACACACAGGCGAGAAACCTTTCGATTGCGATCTGTGCGACAAGAAGTTCTCCGCTTTGGTGGCCCTAAAGAAGCATAGACGTTATCACACCGGCGAGAAGCCTTACACCTGCACTGTTTGCAGTCAATCCTTTGCTGTCAAGGAGGTGCTCAATCGCCACATGAAGCGTCACACAGGCGAGCGTCCGCACAAGTGCAACGAGTGCGGCAAAAGTTTTATTCAGGCCACACAGTTGCGCACACATTCCAAGACGCATCTGCGTCCCTTCCCCTGCTCCAAGTGCGAGCAGAAATTCAAGACAGAGAAACAACTCGAACGCCATGTGAAGGATCATTCGCGCCAGAAGCGTCCCTCGTTTGCCTGCACTGAATGTACGCGTAGCTTCCGCAGCGATGCATTGCTCAAGGAGCACATGGACGCCGGTGATCATTCGCCCATTAAACCCACGCGTGCTAAGCGCACAGCTAAGGTGATCGAGCGCACTGATTGCGCCATTTGTGACAAGAACTTTGATAGCACCGAAACCTTGAGGAATCACATACGCAACGTTCATGAATGTGATCCGGATGATATCTTTGGCACTGAGCCACCAGCGAAGCGTAAGGCCAAGAAGTCTGTTGCTGCTGCCGTGGTATTGCAACCAGATTCGTCGTCGGAGGAGGAATCTGAGGCGGAAGAGATACTGCCTACAACTGCCGCCAATACATCGGCAGGTTCGCTCATCTCAAGCAAAACAGATGATAATGGAGTCGTGGTGCGTGAATTTCTGGTGGATGAGGGCGATGGCAGTGCACAGACGATTGTGCTGGAAAATGAAGTGTACACCATATTGCCATTGGAAGGAACTGAAGAAGGAGCTGCTGCTGCACAGGCATCGGCATCCAAATCGCAGCCAACGTGCAAGGAGAAAGAGAAGACCGTGTCGCCGGTGGTTAAGAAGGAGCAGCGCAAATCCCTGGCTGCCAGTTTGGCCGCTGCCATTGCCGACAATATCGAGGAACCCTCGAGCGATGATGAGTTCAGCGGCGAGGTTCTCACCGAGGAAGATCTCAAGCTGAAGGAGAACATTGGCAAGCTAATCGATATGCTTGTTGATCCACAAACTCTCAAGAAGTATGGCTGGCCCAACAGCTCCGAGGAGACGGTGCTGTGCAAGGTGATCGAGAACTGTGGCCACGATCTGGGCAAGGGTGCCGAGAACTACGCCGAGTTGGACTATGGCAATCGTATGCGCGAGTACTGCAAGTTACTCTTCACTGTGGTCATTCACAATGATTCAATTAAGTCGCTGCTTAACAATTTCCCCATCGACGATGTCATCGAGTATGTGCTAGGCGATGAGGATGCAGAACAAGATCAGGAGGAGCAAGACAATGATTCGGAGAGCGAGCAAGTGGCAGAGAAGGATCTCGATGAGTCGCTCGATAAGTCGAAGGAGAAATCGAAATCGGATGCGGAGAAAACCAGAATAGAAACTGTTGAATTAGACGCTTAA
Protein Sequence: MTDTAASTTAAVIEIVDVAKIAAPPKEKRTGARMKLLNDLQPKGSGKSSVKQEKRTSIKILNNNDEATTGSGTPKPDRRSTGKTSLSSSSPAGSVKILNEKRAAPAASTPVETAKIKTSPSKKKKMDHYVLQAIKSENSAKVDNKTSEGNDDEFVVSGVEEDDDEDDDGDDTLGEGSVNRTSGTNSDLKEMVEHVCGKCYKTFRRVKSLKKHLEFCRYDSGYHLRKADMLKNLEKIEKDAVVMEKKDICFCCSESYDTFHLGHINCPDCPKSFKTQTSYERHIFITHSEFSDYPCSICNAKLRSAALLKLHEQQHQSRGKPYACKICGKDFTRSYHLKRHQKYSSCSANENDTMSCKVCDRVFYRLDNLRAHLKQHLGTQVVKKPEYMCHVCKNCFYSLSTLNIHIRTHTGEKPFDCDLCDKKFSALVALKKHRRYHTGEKPYTCTVCSQSFAVKEVLNRHMKRHTGERPHKCNECGKSFIQATQLRTHSKTHLRPFPCSKCEQKFKTEKQLERHVKDHSRQKRPSFACTECTRSFRSDALLKEHMDAGDHSPIKPTRAKRTAKVIERTDCAICDKNFDSTETLRNHIRNVHECDPDDIFGTEPPAKRKAKKSVAAAVVLQPDSSSEEESEAEEILPTTAANTSAGSLISSKTDDNGVVVREFLVDEGDGSAQTIVLENEVYTILPLEGTEEGAAAAQASASKSQPTCKEKEKTVSPVVKKEQRKSLAASLAAAIADNIEEPSSDDEFSGEVLTEEDLKLKENIGKLIDMLVDPQTLKKYGWPNSSEETVLCKVIENCGHDLGKGAENYAELDYGNRMREYCKLLFTVVIHNDSIKSLLNNFPIDDVIEYVLGDEDAEQDQEEQDNDSESEQVAEKDLDESLDKSKEKSKSDAEKTRIETVELDA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01551865;
90% Identity: iTF_01555539; iTF_01552581; iTF_01550407; iTF_01554095; iTF_01559896; iTF_01551865; iTF_01557693; iTF_01548991; iTF_01558432; iTF_01551133;
80% Identity: -