Zind009159.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Zaprionus indianus
Gene Symbol
su(Hw)
Assembly
GCA_018904595.1
Location
JAEIHA010000860.1:1885263-1888347[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00056 0.04 14.3 2.2 1 20 219 238 219 240 0.94
2 12 2.3e-06 0.00017 21.8 0.4 3 23 291 312 289 312 0.93
3 12 0.008 0.57 10.6 0.1 1 23 318 340 318 340 0.97
4 12 4.6e-07 3.3e-05 24.0 2.4 1 21 347 367 347 368 0.95
5 12 2.8e-06 0.0002 21.5 0.6 2 23 380 401 379 401 0.96
6 12 8.8e-05 0.0063 16.8 5.3 1 23 412 434 412 434 0.99
7 12 6.9e-05 0.0049 17.2 0.9 1 23 440 462 440 462 0.97
8 12 1.4e-05 0.00098 19.3 0.8 1 23 468 490 468 490 0.99
9 12 1.3e-06 8.9e-05 22.6 3.0 1 23 496 518 496 518 0.98
10 12 6e-05 0.0043 17.3 1.2 1 23 522 544 522 544 0.97
11 12 0.00047 0.033 14.5 0.1 1 21 552 572 552 576 0.92
12 12 7.6e-05 0.0054 17.0 0.3 3 23 596 617 594 617 0.96

Sequence Information

Coding Sequence
ATGACAGACACAGCGGCCAGCACGACAGCAGCTGTGATCGAGATCGTCGACGTTGCAAAGATCGCGGCGCCCCCTAAAGAGAAACGAACGGGCGCACGCATGAAGCTACTAAACGATCTACAGCCCAAAGGAGCCGGCAAATCCTCCGTGAAGCAGGAGAAACGCACAAGCATTAAAATACTCAACAACAGCGATGAGGCCACAACGGGCAGTCCCAAACCAGAACGACGATCTACTGGAAAGACTCCTCTCAGCTCCTCTAGTCCGGCAGGCAGTGTCAAGATATTAAATGAGAAGCGTGCAGCTCCTGCTGCCAGCACGCCCGTGGAGACAGCAAAGATAAAGACATCGCCGAACAAGAAAAAGAAAATGGATCATTATGTGCTGCAGGCCATAAAGAGCGAGAACAGTGCTAAAGTGGACAACAAGACGTCGTCCACCATCGAGGTGGAGGATGAAGATACCATTGACTTTATACTCGCCGAGAATGATGACATCGAACTGGCTCCGTCCAAGGGCGGCAACGACGATGAGTTCGTTGTCTCTGGTGTTGAGGAAGACGATGACGAGGATGAGGATGGCGACGATACATTGGGCGAGGGCAGTGTCAATCGCACCAGCGGCACCAATAGTGACCTCAAGGAGATGGTGGAGCATGTGTGTGGTAAATGTTACAAGACATTCCGCCGCGTCAAGAGTCTGAAGAAACATCTTGAATTCTGTCGCTATGACAGTGGTTATCACCTGCGCAAAGCGGACATGCTGAAGAATCTGGAGAAGATCGAAAAGGATGCGGTTGTGATGGAGAAAAAAGACATATGCTTCTGCTGCAGCGAGAGTTACGACACCTTCCATTTGGGCCACATTAACTGTCCGGACTGCCCCAAGTCGTTTAAGACTCAGACAAGCTATGAACGTCACATCTTCATCACCCACTCGGAGTTCAGTGACTACCCCTGCTCCATTTGCAATGCAAAACTGCGCAGCGCTGCCTTGCTGAAGCTTCACGAGCAGCAGCATCAGTCGCGAGGCAAACCCTATGCCTGCAAGATCTGTGGCAAAGATTTCACACGCTCCTATCACCTGAAGCGCCATCAAAAGTACTCATCATGCTCGGCCAATGAGAACGACACTATGAGCTGCAAGGTGTGCGATCGTGTCTTCTATCGCTTGGACAATCTGCGTGCGCATCTCAAGCAGCATCTCGGCACGCAGGTGGTCAAGAAACCAGAGTATATGTGCCATGTGTGCAAGAACTGTTTCTACAGTCTCTCGACGCTCAACATTCACATACGCACACACACGGGCGAGAAACCCTTCGATTGCGATCTGTGCGACAAGAAGTTCTCCGCCTTGGTGGCCCTAAAGAAGCATCGACGGTATCACACAGGCGAGAAGCCTTACACCTGCACTGTTTGCAGTCAATCCTTTGCTGTCAAAGAGGTGCTCAATCGCCACATGAAGCGCCACACGGGCGAACGTCCGCACAAGTGCAACGAGTGTGGTAAGAGTTTCATTCAGGCCACACAGTTGCGCACACATTCCAAGACGCATCTGCGTCCCTTCCCCTGCTCCCAGTGCGAGCAGAAGTTCAAGACAGAGAAACAACTCGAGCGCCATGTGAAGGATCATTCGCGGCAGAAGCGTCCCTCGTTTGCCTGCACTGAATGTACGCGTACCTTCCGCAGCGATGCATTGCTCAAGGAGCACATGGACGCCGGTGATCATTCGCCCATTAAACCCACGCGGGCTAAGCGCACAGCTAAGGTGATCGAGCGCACTGATTGCGCCATTTGTGACAAGAACTTTGATAGCACCGAAACCTTGAGGAATCACATACGCAACGTTCATGAATGTGATCCGGATGACATCTTTGGTACTGAGCCACCAGCGAAGCGTAAGGCTAAAAAGTCTGTGGCTGCTGCCGCGGTAGTGCAACCAGACTCGGAGGATGATGAGGAATCAGAGGCGGAAGAGATTCTGCCTACAACTGCCGCCAATACATCGGCAGGTTCACTCATCTCAAGCAAAACAGATGATAATGGAGTCGTGGTGCGTGAATTTCTGGTGGATGAGGGCGATGGTAGTGCACAGACGATTGTGCTGGAAAATGAAGTGTACACCATATTGCCATTGGAAGGAACTGAAGGAGCTGCTGCACAGCCACCGGCATCTAAATCCCAGCCAGCATCCAAGGAGAAAGAGAAGACCGTGTCGCCGGTGGTTAAGAAGGAGCAGCGCAAATCACTGGCTGCCAGTTTGGCCGCAGCCATTGCCGATAACATCGAGGAACCCTCGAGCGATGATGAGTTTAGCGGCGAGATGCTCACCGAGGAAGATATCAAGCTGAAGGAGAACATTGGCAAGCTAATCGATATGCTTGTGATCGAGAACTGTGGCCACGATCTGGGCAAGGGCGCCGAGAACTACGCGGAGTTGGACTATGGCAATCGCATGCGCGAGTACTGCAAGCTACTCTTCACCGTGGTCATTCACAATGATTCCATTAAGTCGCTGCTTAACAATTTCCCCATCGACGATGTCATCGAATATGTGCTAGGTGATGAGGATGCAGAACAAGATCAGGAGGATAATGACAATGATTCGGAGAAGCAACAAGTGGGAGAGAAGGAGCTCGATGAGTCGCTCGATAAGTCGACAGAGAAAGCGAAATCGGACGCAGAGAAAACCAGAATAGAAACTGTTGAAGTAGACGCTTAA
Protein Sequence
MTDTAASTTAAVIEIVDVAKIAAPPKEKRTGARMKLLNDLQPKGAGKSSVKQEKRTSIKILNNSDEATTGSPKPERRSTGKTPLSSSSPAGSVKILNEKRAAPAASTPVETAKIKTSPNKKKKMDHYVLQAIKSENSAKVDNKTSSTIEVEDEDTIDFILAENDDIELAPSKGGNDDEFVVSGVEEDDDEDEDGDDTLGEGSVNRTSGTNSDLKEMVEHVCGKCYKTFRRVKSLKKHLEFCRYDSGYHLRKADMLKNLEKIEKDAVVMEKKDICFCCSESYDTFHLGHINCPDCPKSFKTQTSYERHIFITHSEFSDYPCSICNAKLRSAALLKLHEQQHQSRGKPYACKICGKDFTRSYHLKRHQKYSSCSANENDTMSCKVCDRVFYRLDNLRAHLKQHLGTQVVKKPEYMCHVCKNCFYSLSTLNIHIRTHTGEKPFDCDLCDKKFSALVALKKHRRYHTGEKPYTCTVCSQSFAVKEVLNRHMKRHTGERPHKCNECGKSFIQATQLRTHSKTHLRPFPCSQCEQKFKTEKQLERHVKDHSRQKRPSFACTECTRTFRSDALLKEHMDAGDHSPIKPTRAKRTAKVIERTDCAICDKNFDSTETLRNHIRNVHECDPDDIFGTEPPAKRKAKKSVAAAAVVQPDSEDDEESEAEEILPTTAANTSAGSLISSKTDDNGVVVREFLVDEGDGSAQTIVLENEVYTILPLEGTEGAAAQPPASKSQPASKEKEKTVSPVVKKEQRKSLAASLAAAIADNIEEPSSDDEFSGEMLTEEDIKLKENIGKLIDMLVIENCGHDLGKGAENYAELDYGNRMREYCKLLFTVVIHNDSIKSLLNNFPIDDVIEYVLGDEDAEQDQEDNDNDSEKQQVGEKELDESLDKSTEKAKSDAEKTRIETVEVDA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01551865;
90% Identity
iTF_01556969;
80% Identity
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