Zlac007181.1
Basic Information
- Insect
- Zaprionus lachaisei
- Gene Symbol
- -
- Assembly
- GCA_018901815.1
- Location
- JAEIFI010000763.1:5455210-5465263[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 4.4e-06 0.0003 20.9 0.4 1 23 111 133 111 133 0.97 2 17 0.00064 0.045 14.1 0.9 1 23 139 161 139 161 0.95 3 17 9.2e-06 0.00064 19.9 3.1 1 23 167 189 167 189 0.97 4 17 2.1e-05 0.0015 18.7 4.7 1 23 195 217 195 217 0.99 5 17 3.8e-05 0.0027 17.9 5.7 1 23 223 245 223 245 0.97 6 17 1.9e-07 1.3e-05 25.2 4.3 1 23 251 273 251 273 0.98 7 17 6.7e-08 4.7e-06 26.6 2.4 1 23 279 301 279 301 0.97 8 17 3.9e-05 0.0027 17.9 6.7 1 23 308 330 308 330 0.97 9 17 6.8e-05 0.0048 17.1 6.5 1 23 336 358 336 358 0.98 10 17 6.1e-06 0.00043 20.4 4.5 1 23 364 386 364 386 0.98 11 17 4.4e-06 0.00031 20.9 8.1 1 23 392 414 392 414 0.98 12 17 3.6e-06 0.00025 21.2 7.6 1 23 420 442 420 442 0.97 13 17 4e-07 2.8e-05 24.2 7.7 1 23 448 470 448 470 0.98 14 17 0.00013 0.0088 16.3 9.5 1 23 476 499 476 499 0.95 15 17 4.5e-05 0.0031 17.7 0.9 1 23 505 527 505 527 0.98 16 17 0.00049 0.034 14.4 3.4 1 23 537 559 537 559 0.97 17 17 5.6e-06 0.00039 20.6 1.6 1 23 565 588 565 588 0.96
Sequence Information
- Coding Sequence
- ATGCAGCACGTGAGCGCTGCCAGTTCGGCACCTTCGGTGGTTTCAGCACCGGTGGTGACCACTGGCGGTGGCACCACCATCACCTTGGGCGGAGGACAGCCCCCAATAATACCCAGTAAAGGACACGGCGGCAGCGATAATCATCATAATCATAAGGAGGACGGTAGCGGTAAACCGCCCCACGGCATTGAAATGTATAAAGTGAACATTGAGGATATATCACAGTTATTTACGTATCACGAAGTCTTTGGTAAAATCCATGGCGATGTGGTTAATCATGTGGCGGCGGTGCATGGCAGCCAATTGCCACCGCCTCACGAGCGTAAGCCGTTCATGTGTCAGGTGTGCGGTCAGGGTTTTACCACATCCCAGGATTTAACCCGTCATGGTAAAATTCATATTGGCGGTCCCATGTTCACCTGCATTGTCTGTTTCAATGTGTTCGCAAATAATACAAGCCTGGAGCGACATATGAAGCGACATTCGACAGATAAACCATTCGCCTGCACTATTTGCCAAAAGACTTTTGCACGCAAAGAGCATCTGGACAATCATTTTCGTTCCCATACGGGCGAAACGCCGTTCCGTTGCCAGTACTGCGCCAAGACGTTTACGCGCAAGGAGCACATGGTCAATCATGTGCGCAAACACACGGGTGAGACGCCACATCGTTGCGATATTTGTAAGAAGTCCTTTACGCGCAAGGAACACTATGTTAACCACTACATGTGGCACACTGGTCAAACACCGCATCAGTGCGATGTCTGTGGCAAGAAATACACACGCAAGGAGCATCTAGCCAACCATATGCGCTCCCACACCAACGAGACGCCGTTCCGTTGTGAGATCTGCGGCAAGAGCTTTAGCCGCAAGGAGCACTTCACCAATCACATACTCTGGCATACAGCAGGCGAGACGCCACATCGGTGCGATTTCTGCTCCAAGACGTTTACGCGCAAGGAACATCTGTTAAATCACGTGCGTCAGCACACCGGGGAGTCGCCGCATCGCTGCTCCTACTGCATGAAGACGTTTACGCGCAAGGAGCATCTGGTGAATCATATACGCCAGCACACGGGTGAGACACCGTTCAAGTGCACGTACTGCACGAAAGCGTTCACTCGCAAAGATCACATGGTTAATCATGTACGGCAACATACAGGCGAATCGCCGCACAAGTGCACATACTGCACCAAGACGTTTACACGCAAGGAGCATTTGACGAATCATGTGCGTCAGCACACGGGCGATTCGCCGCATCGTTGCAGCTATTGCAAGAAGACCTTTACCCGCAAGGAGCATTTGACGAATCATGTTCGTCTCCATACAGGTGATTCGCCGCACAAATGTGAATACTGTCAGAAGACGTTTACGCGCAAGGAGCATCTCAATAATCATATGCGCCAACATTCGAGTGACAATCCCCATTGCTGCAATGTGTGCAACAAGCCGTTCACACGCAAGGAGCATCTGATCAATCATATGTCCCGTTGCCACACCGGCGATCGTCCCTTCACCTGTGAGACATGTGGCAAATCGTTCCCCCTCAAAGGCAATCTGTTATTCCATCAGCGCAGCCACACCAAGGGACAGGAGTGTGAGCGTCCGTTTGCCTGTGAGAAGTGCCCCAAGAATTTCATATGCAAAGGTCACTTGGTCTCGCACATGCGCTCCCATTCGGGTGAGAAACCACACGCGTGCACACTGTGCAGCAAGGCTTTCGTCGAGCGCGGCAATTTGAAGCGCCACATGAAGATGAATCACCCGGATGCTATGATGCCGCCACCACCCGTGCATCCGCATCCGCAAATACCGGCTGGTGTGCTGACCCAAGTCAAGCAGGAAGTGAAACCGATCATAATTCCCCATCACTCGGCGACGACCACGATGCATACCATCCAACAGATAACAGCGGGCGCAGCAGCGGCTGGCGCCGGTGCCGTCCAGCTAACGCCAGGCCTGGTGCCGCTGTTGCAACATCTGCCCAGCAATGTAGAGCAGCATCCCGTGGTTTACTAA
- Protein Sequence
- MQHVSAASSAPSVVSAPVVTTGGGTTITLGGGQPPIIPSKGHGGSDNHHNHKEDGSGKPPHGIEMYKVNIEDISQLFTYHEVFGKIHGDVVNHVAAVHGSQLPPPHERKPFMCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNTSLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTAGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGDSPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHTKGQECERPFACEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAMMPPPPVHPHPQIPAGVLTQVKQEVKPIIIPHHSATTTMHTIQQITAGAAAAGAGAVQLTPGLVPLLQHLPSNVEQHPVVY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00599004;
- 90% Identity
- iTF_01556966; iTF_01551862; iTF_01548988;
- 80% Identity
- -