Zkol011900.1
Basic Information
- Insect
- Zaprionus kolodkinae
- Gene Symbol
- lrrfip2
- Assembly
- GCA_018901885.1
- Location
- JAEIFM010000160.1:977047-987155[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.7e-99 4.3e-95 318.3 19.5 20 300 1 274 1 274 0.96 2 2 0.27 4.4e+03 -3.5 0.3 129 228 295 310 280 318 0.43
Sequence Information
- Coding Sequence
- ATGCGAGAACTGGACAGGCAGCAAAAGGAACAGGAGCATAACGCTGATCGTGCGTTTGATATGCAAAATACTAGTGCTGGAATTATTACGGATACAGTTCCATCACATCCTTCTCGCCTAGCTCACGGAAGTATTGCTTGCTTGGCTCGTTCAGCAGCTTCGCGTCGCAGTAGTGAAGATTCTTTAGAAGATGAAGGTCGTAGTTTGCGTGACATCAAACATGAGCTCAAGGATGTTGAAGAGCGATTTCGAAAGGCTATGATAACAAATGCACAGCTTGACAATGACCGATCATCGCAAACATACGAAGTTAAGCTACTTAAAGATAGAAATGAAACAATTCAAGAGTCTTTTGCTCAACTTCAGCGTGAGCTCAAAAATAAATTTCGTGATTGCAACTCTCTTAAACGGAACCTGGACCGCGCAACACTAGAATTGAATTTGCTGCAAGGTCAATTAAATGAGCGGGATGCCCTTATAGCTGAGCAAGGTCTAGTTATAGTTGCCATTGAAAATAGTGATGGCAGTGATGCTAAGCGGGCCTTAGTCAGTATTGAAAACTCTAATATTTTGGCGACCGTGCATGGATCACTTGATGTAAGACTCAACAAATTCACAGAAGAAAAACAGAGTCTTTTAATGGAAGTGCAAAAACTACATGAAGAGCTGAATTCATATAAAACTGAAGGAAGAATGGCCAGAGGTATATCACTCAATGGCTCTTGGGGCTCTGACGATGATTATGAGATGCAACGAGAGGCCAATAAAACCATATCAGATTATAAATACAAACTGCAAAAGTCTGAGCAGGAAGTCGCTACTCTCCAAGCTAGTTTGGCACGATCGGAGACGCAAGTAATACGGTACAAAAGCACGGCGGAAGCCGCTGAGAAATCAGAGGCAGAACTTAAAGTGGAACGGCGAAAACTGCAACGTGAGCATACAGAAGGCTACAACTCCGATCCCACACAGTTTGTACTCGATCTCAGCTATTGTAAGAGCTAG
- Protein Sequence
- MRELDRQQKEQEHNADRAFDMQNTSAGIITDTVPSHPSRLAHGSIACLARSAASRRSSEDSLEDEGRSLRDIKHELKDVEERFRKAMITNAQLDNDRSSQTYEVKLLKDRNETIQESFAQLQRELKNKFRDCNSLKRNLDRATLELNLLQGQLNERDALIAEQGLVIVAIENSDGSDAKRALVSIENSNILATVHGSLDVRLNKFTEEKQSLLMEVQKLHEELNSYKTEGRMARGISLNGSWGSDDDYEMQREANKTISDYKYKLQKSEQEVATLQASLARSETQVIRYKSTAEAAEKSEAELKVERRKLQREHTEGYNSDPTQFVLDLSYCKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01559751;
- 90% Identity
- -
- 80% Identity
- -