Zind004486.1
Basic Information
- Insect
- Zaprionus indianus
- Gene Symbol
- -
- Assembly
- GCA_018904595.1
- Location
- JAEIHA010000716.1:267088-270121[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.7 1.9e+02 2.7 0.9 2 23 119 141 118 141 0.92 2 12 4.8e-06 0.00034 20.8 4.1 2 23 186 208 185 208 0.95 3 12 0.0096 0.68 10.4 9.0 2 23 483 504 483 504 0.97 4 12 6.3e-06 0.00044 20.4 4.0 1 23 510 533 510 533 0.96 5 12 0.0034 0.24 11.8 0.3 1 23 538 561 538 561 0.95 6 12 0.00013 0.0095 16.2 4.6 1 23 579 601 579 601 0.96 7 12 3.2e-05 0.0023 18.2 1.6 1 23 606 628 606 628 0.98 8 12 3e-05 0.0021 18.3 1.7 1 23 634 656 634 656 0.95 9 12 2.1e-05 0.0015 18.7 0.7 1 23 662 684 662 684 0.98 10 12 3.1e-07 2.2e-05 24.5 2.7 3 23 692 712 691 712 0.99 11 12 6.7e-08 4.7e-06 26.6 1.7 1 23 718 740 718 740 0.99 12 12 0.9 64 4.2 6.1 1 19 745 763 745 768 0.89
Sequence Information
- Coding Sequence
- ATGCCTGATACAGACACAGCGCCATACGACCAGTTCGATGCGGAACGCGTCTGTCGCGTCTGCCTGCGTGAGGTAGGCGATTTCTACTTCATCTATGATGAGGCGCCTGTGGAGCAGGGCGCGAACATTGCCCAGATACTTAACGAATGCACACGCTACTCCTGCGAGCGGTACGACAAGATGCCCCATCATATGTGCGACACGTGCATCAAGGCCGCCTGTCAGGCGTATCGTTTCAAACGGGATGCCGAGAAGGCATACCGTTCTTTGGTGGCCATATTGGGATGCACACCCGTCAGCAAGCCCAACTGCAGGGACATATGCACTCAGACTGAAGTCAGTACTCCGATGCTGCCGTGCGGCATCTGTGATGAAAAATGTCTCGATACTCTTGAGCTGCGACTGCATCGCAATCGAAAGCACAAGCATGTGAAAGAATCGGGCCTTAAGTGCAGGTTGTGCAATTCACAGTTTCTGCAGTTCAGACAGTTGCACAATCATCTGATGAAGCAACACGATCCGCAACTGGCAACGCCTTCGCTGCATCGTACTCTCGTGTGTCGTGAGTGCGAGCGTTGCTTTACAAGACGCGATCATCTGTTGCGCCACATGCGACTTGTTCACAATCTGGATAAATTGGATGTGCGACGCAGACGTCAGAATCTGACAGTTGAGCAGGAGCAGGACTCATCGACTTCCGCCTGGCCGCCCATCGATGAGGCAACCATGCAAAGTGGTGATGAGCTACAGTCGGCTGCTGTGCTACTTAATCCGCATGCCTGCTCGGACGACGATGAAGGCAATAATAACGATTCCCATAACAATCCCATATCAAGCAATGAGGAGCCGGACGATGAGGAGGTCGATGCCCAAGCGAAACAATCATTGTGGCTGCATATCAAACCGGAGCCCGACACTGAACTAGACTCGGCAACTCAGCTAGAGCCAGAACTAGATCTAGATCAGTTGAAAGGTGAGAGACTCAGAAAAAAAGCAAAGCTTGTTGAAGACGAGGTTGAAAAGCAAAAGCAAACGGTGGTCAAGGAGGAACCCCTGGGAATTGCGCCTGGCCAAGGGGAACAACAATTACCCATCAAGGAGGAGCGGCAACTTGTTGAGGGGACCCACGACGACGAGGAAGAGATATGCGAACTGGATGCGGCTGCAGTTGCCGACATGTTGCACACCACAGACGAGGAGGACGAAGATGAGCAGTTGTACGATGACGATGAGGATGATAATGGCGAAGAAGATGATGACAATACGACAAATGAGCAACCCAATCTTGTGGAAGACTCAAAGGCAGCGAATAACTTGCTGACACTGCCACAGAGGGGACAAGCGAAGATCGTACGCGAGTATCTGGAGAATCCAAGCCAAGGTGGCAAACAGAGGCGTCGTCGTCGCCGCAAGCAGCCAGCTGATGGAGAGACCAATCCGGACAACCGCTGTGAAGTCTGTCAACGCACCTTTTCCCGCCATTGTCATCTTCTGCGTCACAAGCTATCTCATCTGGAGAAGAAGCCCCACAGCTGTCCCCATTGTCCCAAGGAGTTTGCGCGCAGCGATCACCTGAAGTCGCACGTCCAGAGTTTGCATGGCAACAAGGAGCACAAGTGTCTCCTTTGCGAGGCAGCATTCGCCCGTCCCGATGCCCTAGATCGCCATAAGTTGAGCAAACACAATGGCGAAGGCCTGGACGCCAGCAGCGAGCTGAAGATCCAGATGAGCGAACACACCTGTGAATACTGCGCCAAGCGTTTCTCCAGCAAGACTTACCTACGCAAGCACACGCTGCTGCACACAGATTTCCTATACGCCTGCAAGAACTGCGATGAGACCTTCAAGGAGCGCCAGCAGCTGCGCAGCCACGAGAAGACTCACACGGGCCAGCGTAATTTTCTCTGTTGCATTTGTGGCGACAGTTTCGCCCGTAACGACTATCTGCGCGTTCATATGCGACGCCACAATGGGGAGAAGCCCTATAAGTGCCGTTACTGTGTGAAGGCATTTCCGCGCGCAACGGATCTTAAGGTGCATGAGCGATATCATACGGGCACCAAACCCAATCTGTGCAATACATGCGGCAAGAGCTTCCATCGAGCCTACAACCTGACAATACACATGCGAACCCACACGGGCGAGCGTCCCTATAAGTGCGAGCAGTGCTCGAAGAGCTTCAGCCAGAGCAATGATCTTAAAGCGCACATTCGGCGCCACACTGGAGAGCGGTACAAGTGTCCACACTGTGATACCTACTTCCTGCAGCTCTACCACATGCGCAATCATTGTCTCAGCGCCCATAATAAGCACATTGAGACAAAGACGGGACGCTTGCAGCGCACTGGACTCCTAGACGAGCCGAATAACACACACCTGACCACGGTCGTAATGCCGCCAGTGCAACGTTTTCAGCCTCCGACCTCTGATCGGACGACTGTGACACCAACAACAACAACAGCACTAACAACATTGACGCCAGCGCAGATAACGCATTCACCGATGACTTATAATAATAACAACAACAATACAACATCACCGGTTTCCACAGGTGTGACGGCTTCCGTGCAGCACGATGAAGCTGCCTTCTTGGGTGCTGCCGGCGGAAGTGCCCAACCTGCTGTATCCACAGCGGCGCCCTTTGGTGCCTTCAATATATCGCCTGTCGTCATGGCTCATCTCATGTACAACAGCCACAGTGGCAATAACAGCCAACAAAGCAACGCCAGTGGAAGTGAAGCGGGCAAATAA
- Protein Sequence
- MPDTDTAPYDQFDAERVCRVCLREVGDFYFIYDEAPVEQGANIAQILNECTRYSCERYDKMPHHMCDTCIKAACQAYRFKRDAEKAYRSLVAILGCTPVSKPNCRDICTQTEVSTPMLPCGICDEKCLDTLELRLHRNRKHKHVKESGLKCRLCNSQFLQFRQLHNHLMKQHDPQLATPSLHRTLVCRECERCFTRRDHLLRHMRLVHNLDKLDVRRRRQNLTVEQEQDSSTSAWPPIDEATMQSGDELQSAAVLLNPHACSDDDEGNNNDSHNNPISSNEEPDDEEVDAQAKQSLWLHIKPEPDTELDSATQLEPELDLDQLKGERLRKKAKLVEDEVEKQKQTVVKEEPLGIAPGQGEQQLPIKEERQLVEGTHDDEEEICELDAAAVADMLHTTDEEDEDEQLYDDDEDDNGEEDDDNTTNEQPNLVEDSKAANNLLTLPQRGQAKIVREYLENPSQGGKQRRRRRRKQPADGETNPDNRCEVCQRTFSRHCHLLRHKLSHLEKKPHSCPHCPKEFARSDHLKSHVQSLHGNKEHKCLLCEAAFARPDALDRHKLSKHNGEGLDASSELKIQMSEHTCEYCAKRFSSKTYLRKHTLLHTDFLYACKNCDETFKERQQLRSHEKTHTGQRNFLCCICGDSFARNDYLRVHMRRHNGEKPYKCRYCVKAFPRATDLKVHERYHTGTKPNLCNTCGKSFHRAYNLTIHMRTHTGERPYKCEQCSKSFSQSNDLKAHIRRHTGERYKCPHCDTYFLQLYHMRNHCLSAHNKHIETKTGRLQRTGLLDEPNNTHLTTVVMPPVQRFQPPTSDRTTVTPTTTTALTTLTPAQITHSPMTYNNNNNNTTSPVSTGVTASVQHDEAAFLGAAGGSAQPAVSTAAPFGAFNISPVVMAHLMYNSHSGNNSQQSNASGSEAGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01552594; iTF_01557702; iTF_01556975; iTF_01555545;
- 90% Identity
- iTF_01551870;
- 80% Identity
- iTF_01552594;