Znig016746.1
Basic Information
- Insect
- Zaprionus nigranus
- Gene Symbol
- -
- Assembly
- GCA_018903425.1
- Location
- JAEIGD010000057.1:332291-335329[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.4 2.1e+02 2.9 0.8 2 23 119 141 118 141 0.92 2 13 0.081 7.4 7.5 3.3 2 23 150 172 149 172 0.96 3 13 4.5e-06 0.00041 20.9 4.3 2 23 186 208 185 208 0.95 4 13 0.0087 0.79 10.5 9.0 2 23 398 419 398 419 0.97 5 13 2.1e-06 0.00019 21.9 3.1 1 23 425 448 425 448 0.96 6 13 0.00052 0.047 14.4 0.2 1 23 453 476 453 476 0.96 7 13 0.00012 0.011 16.4 4.6 1 23 494 516 494 516 0.96 8 13 0.0001 0.0094 16.6 1.6 1 23 521 543 521 543 0.98 9 13 2.7e-05 0.0024 18.4 1.7 1 23 549 571 549 571 0.95 10 13 1.9e-05 0.0018 18.9 0.7 1 23 577 599 577 599 0.98 11 13 2.8e-07 2.5e-05 24.7 2.7 3 23 607 627 606 627 0.99 12 13 1.8e-08 1.7e-06 28.4 1.0 1 23 633 655 633 655 0.99 13 13 0.81 73 4.3 6.1 1 19 660 678 660 683 0.89
Sequence Information
- Coding Sequence
- ATGCCTGACACAGACACTGCGCCATATGACCAGTTCGATGCGGAACGCGTCTGTCGCGTCTGCCTGCGCGAGGTAGGCGATTTCTACTTCATCTATGATGAGGCGCCTGTGGAGCAGGGCGCGAACATTGCCCAGATACTAAACGAATGTACACGCTACACCTGCGAGCGGTACGACAAGATGCCCCATCATATGTGCGACACGTGCATCAAGGCCGCCTGCCAGGCGTATCGTTTCAAACGGGATGCGGAGAAGGCATACCGCTCTTTGGTGGCCATACTGGGGTGCACACCCGTCAGCAAGCCCAACAGCAGGGACATATGCACTCAAACCGAACTCGGTACTCCGATGCTGCCGTGCGGCATCTGTGATGAAAAATGTCTCGATACTCTTGAGCTGCGACTGCATCGCAATCGAAGGCACAAGCATGCGGAGGAGTCGGGCCTTAAGTGCAGGTTGTGTGATGCACAGTTTCAGCAGTTCAGACAGTTGCACAATCATCTAATGAAGCAACACGATCCGCAACCAGCAACGTCTTCGCTGCATCGTACTCTCGAGTGTCGTGAGTGTGAACGTTGCTTTACGAGACGCGATCATCTGTTGCGCCACATGCGACTTGTTCACAATCTGGATAAGTTGGATGGGCGACGCAGGCGTCAAAAACTGACAAGTGCTGATGAACTAGAGTCGGCTGCTGTGCTGCTTAATCCCCAAGCCTGTTCGGATGAAGATAATGGCAATAATAACGATTGCCATAACAATCCCATATCAAGCAATGAGGAGCCAGACGATGAGGAGGTTGATGCCGAAGCTAAGCAATCCTTGTGGCTGCACATCAAACCCGAGCCCGAGACTGAACTAGACTCGGCTACTCAGCAGGAGCCAGATCCAGATCTGGAGCAAGTAAAACGTGAGAGACTCAGAAAAAAAGCAAAGCTTGTAGACGACGAAGTCGATAAGCAAACGGTGGTCAAGGAGGAACCCCTGGGAGTTGCCCCTGGCCAAGGAGAACAACAGTTACCCATCAAGGAAGAGCGGCAACACGTTGAGGGGACCCACGACGACGAGGAAGAGATATACGAACTTGATGCGGCTGCAGTTGCCGACATGAACCAAGCCAAGGTGGCAAACAGCAGCGGCGTCGTCGTCGTCGCAAGCAGCCAGCTGATGGGGGAGACCAATCCGGAGAACCGCTGTGAAGTTTGTCAGCGCACCTTTTCCCGCCATTGTCATCTTCTGCGGCACAAGCTGTCGCATCTGGAGAAGAAGCCACACAGCTGTCCGCATTGTCCCAAGGAGTTTGCACGCAGCGATCACCTGAAGGCGCACGTCCAGAGTCTTCATGGCAACAAGGAGCACAAGTGTGTTCTTTGCGAGGCAGCATTCGCCCGTCCCGATGCCCTGGAACGCCATAAGTTGAGCAAACACAATGGCGAGGGCCTGGACGCCAGCAGCGAGCTGAAGATCCAGATGAGCGAACACACCTGCGAATACTGCGCCAAGCGTTTCTCCAGCAAGACTTACCTGCGCAAGCACACGCTCCTGCACACAGAGTTCCTCTACGCCTGCAAGAGCTGCGACGAGACCTTCAAGGAGCGCCAGCAGCTGCGCAGCCACGAGAAGACTCACACGGGCCAGCGTAACTTCCTCTGTTGCATTTGTGGCGACAGTTTCGCCCGCAACGATTATCTGCGCGTTCATATGCGACGCCACAATGGGGAGAAGCCTTACAAGTGCCGTTACTGTGTCAAGGCATTCCCGCGCGCCACCGATCTCAAGGTGCATGAGCGATATCATACGGGCACCAAGCCCAATCTGTGCAATACATGCGGCAAGAGCTTCCATCGGGCCTACAACCTGACCATACACATGCGCACCCACACGGGCGAGCGTCCCTATAAGTGCGAGCAGTGCCCGAAGAGCTTCAGCCAGAGCAACGACCTAAAGGCGCACATCCGTCGCCACACCGGGGAGCGGTACAAGTGTCCACACTGTGATACCTACTTCCTGCAGCTCTACCACATGCGCAATCATTGCCTCAGCGCTCACAACAAGCACATTGAGACGAAGACGGGACGCTTGCAGCGCACTGGACTCCTAGACGAGCCGAATAACACACACCTGACCACGGTCGTTATGCCGCCAGTGCAACGTTTTCAGCCTCCGACCGCTGATCGTGCGACTGTGACAACAACAACAACAGCACTCACAACATCGACCCCAGCACCGATACTGCATTCACCGATGACTTATAATAATAATAACAACAACAGTTCAACACCACCAGTTTCGACAGGTGTGACGGTTTCCGTGCAGCACGATGAAGCCGCCTTGGGTGCTGCCGGCGGAAGTGCTCAAGCTGCTGCATCCACAGCGGCGCCCTTTGGTGCTTTTAACATAGCGCCAGTAGTCATGGCGCATCTCATGTACAACAGCCACAGTGGCAATAACAGCCAACAAAGCAACGCCAGTGGAAGTGAAACGGGCAAATAA
- Protein Sequence
- MPDTDTAPYDQFDAERVCRVCLREVGDFYFIYDEAPVEQGANIAQILNECTRYTCERYDKMPHHMCDTCIKAACQAYRFKRDAEKAYRSLVAILGCTPVSKPNSRDICTQTELGTPMLPCGICDEKCLDTLELRLHRNRRHKHAEESGLKCRLCDAQFQQFRQLHNHLMKQHDPQPATSSLHRTLECRECERCFTRRDHLLRHMRLVHNLDKLDGRRRRQKLTSADELESAAVLLNPQACSDEDNGNNNDCHNNPISSNEEPDDEEVDAEAKQSLWLHIKPEPETELDSATQQEPDPDLEQVKRERLRKKAKLVDDEVDKQTVVKEEPLGVAPGQGEQQLPIKEERQHVEGTHDDEEEIYELDAAAVADMNQAKVANSSGVVVVASSQLMGETNPENRCEVCQRTFSRHCHLLRHKLSHLEKKPHSCPHCPKEFARSDHLKAHVQSLHGNKEHKCVLCEAAFARPDALERHKLSKHNGEGLDASSELKIQMSEHTCEYCAKRFSSKTYLRKHTLLHTEFLYACKSCDETFKERQQLRSHEKTHTGQRNFLCCICGDSFARNDYLRVHMRRHNGEKPYKCRYCVKAFPRATDLKVHERYHTGTKPNLCNTCGKSFHRAYNLTIHMRTHTGERPYKCEQCPKSFSQSNDLKAHIRRHTGERYKCPHCDTYFLQLYHMRNHCLSAHNKHIETKTGRLQRTGLLDEPNNTHLTTVVMPPVQRFQPPTADRATVTTTTTALTTSTPAPILHSPMTYNNNNNNSSTPPVSTGVTVSVQHDEAALGAAGGSAQAAASTAAPFGAFNIAPVVMAHLMYNSHSGNNSQQSNASGSETGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01554107;
- 90% Identity
- -
- 80% Identity
- -