Zorn011635.1
Basic Information
- Insect
- Zaprionus ornatus
- Gene Symbol
- -
- Assembly
- GCA_018904035.1
- Location
- JAEIFZ010000001.1:28592185-28595947[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.2 1.7e+02 3.0 0.8 2 23 119 141 118 141 0.92 2 13 0.1 7.8 7.1 3.2 2 23 150 172 149 172 0.96 3 13 2.5e-06 0.00019 21.6 2.1 2 23 186 208 185 208 0.95 4 13 0.0087 0.67 10.5 9.0 2 23 481 502 481 502 0.97 5 13 2.1e-06 0.00017 21.9 3.1 1 23 508 531 508 531 0.96 6 13 0.00022 0.017 15.5 0.5 1 23 536 559 536 559 0.96 7 13 0.00012 0.0093 16.3 4.6 1 23 577 599 577 599 0.96 8 13 0.0001 0.008 16.6 1.6 1 23 604 626 604 626 0.98 9 13 2.7e-05 0.0021 18.4 1.7 1 23 632 654 632 654 0.95 10 13 1.9e-05 0.0015 18.8 0.7 1 23 660 682 660 682 0.98 11 13 2.8e-07 2.2e-05 24.6 2.7 3 23 690 710 689 710 0.99 12 13 1.8e-08 1.4e-06 28.4 1.0 1 23 716 738 716 738 0.99 13 13 0.81 62 4.3 6.1 1 19 743 761 743 766 0.89
Sequence Information
- Coding Sequence
- ATGCCTGACACAGAAACAGCGCCATATGACCAGTTCGATGCGGAACGCGTCTGTCGCGTCTGCCTGCGCGAGGTAGGCGATTTCTACTTTATCTACGATGAGGCGCCTGTGGAACAGGGCGCGAATATTGCTCAGATACTAAACGAATGCACGCGCTACACCTGCGAGAGGTACGATAAAATGCCCCATCATATGTGCGACACGTGCATCAAGGCCGCCTGCCAGGCGTATCGTTTCAAACGGGATGCGGAGAAGGCATACCGCTCTTTGGTGGCCATGTTGGGATGCAAACCCGTCAGCAAGCCCAACAGCAGGGACGTATGCACTCAGACTGAGCTTAATAGTCCGATGCTCCCGTGCGGCATCTGTGATGAAAGATGTCTTGATACTCTTGAGCTGCGACTGCATCGCAATCGAAAGCACAAGCATGTAAAGGAGTTGGACCTCAGGTGCAGGTTGTGTGATGCACAGTTTCAGCAGTTCAGACAGTTGCACAATCATCTAATGAAGCAACACGATCCGCAATCGGCAACGCCATCGCTGCATCGTACTCTCGAGTGTCGTGATTGCGAACGTAACTTTACCAGACGCGATCATCTGTTGCGCCACATGCGACTTGTTCACAATCTGCAAAAGTTGGATGGGCGACGCAGTCGTCAGAAAGTGACAGTTGTGCAAGAGGAGGATCAGGACTCATCGACTACCGCCTGGCCCCCCATCGACGAGGCAACCATGCAGAGTGGCGATGAACTAGAGTCAGCTGCTGTATTGCTTAATCCCAATGTCTGTTCGGATGAAGATGAAAGCAATAATGATTGCCATAACAACCCCATATCAAGCAATGAGGAGCCAGACGATGAGGAGGTTGATGCCGAGGCTAAACAATCCTTGTGGCTGCATATCAAACCGGAGCCCGAAACTGAACTAGACTCGACAACCCAGCTGGAGCCAGAACCAGATCTGGACCAGGTGAAACGTGAGAAACTCAGAAAAAAAGCAAAGCTTATTGTCGACGAAGTCGATAACCAAACGGTGGTTAAGGAGGAACCCCTGGGAGTTGCCCCTGTCCAAGGGGAACAACAATTACCCATTAAGGAGGAGCGGCAACACGTTGAGGGAATCCACGACAACGAGGAAGATATATACGAACTGGATGCGGCTGCAGTTGCCGACATGTTGCACAGCACAGACGAGGAGGACGAAGATGAACAACTGTACGATGACAATGAGGACGATGATGGAGAAGAAGATGATGACGATGCGACAAATGAACAACCCAATCCAGATTCAAAGTCAGAGAATAATTTGTTGAAACTGCCACTAGGTGGACAAGTGGACATCGTACGCGAGTATTTGGAGGAGCCAAGCCAAGGAGGCAAACTGCAGCGGCGTCGTCGTCGTCGCAAACAGCCAGCTGATGGGGAGACCAATCCGGAGAACCGCTGTGAAGTCTGTCAGCGCACCTTTTCCCGCCATTGTCATCTTTTGCGTCACAAGCTGTCGCATCTGGAGAAGAAGCCCCACAGCTGTCCGCATTGTCCCAAGGAGTTTGCGCGCAGCGATCACCTGAAAGCCCACGTCCAGAGTCTGCATGGCAACAAGGAACACAAGTGTGTCCTTTGCGAGGCAGCATTCACCCGTCCCGATGCGCTGGAACGCCATAAGTTGAGCAAACACAATGGCGAGGGCCTGGACGCCAGCAGCGAGCTGAAGATCCAGATGAGCGAACATACTTGCGAATATTGCGCCAAGCGTTTCTCCAGCAAGACTTACCTGCGCAAACATACGCTCCTGCACACAGAGTTCCTCTACGCCTGCAAGAGCTGCGACGAGACCTTTAAGGAGCGCCAGCAGCTGCGCAGCCACGAGAAAACTCACACGGGCCAGCGGAATTTCCTCTGTTGCATTTGTGGTGACAGTTTCGCCCGAAACGATTATCTGCGCGTTCATATGCGACGCCACAATGGGGAGAAGCCTTACAAGTGCCGTTACTGTGTTAAGGCCTTCCCGCGCGCCACGGATCTTAAGGTGCATGAGCGATATCATACGGGCACCAAGCCCAATCTGTGCAATACGTGCGGCAAGAGTTTCCATAGGGCCTACAACCTAACCATACACATGCGCACCCACACGGGCGAGCGTCCCTATAAGTGCGAGCAGTGCCCGAAGAGCTTCAGCCAGAGCAACGACCTAAAGGCGCACATCCGTCGTCACACCGGGGAGCGGTACAAGTGTCCACACTGTGATACCTACTTCCTGCAGCTCTACCACATGCGCAATCATTGTCTAAGCGCTCACAATAAGCATATTGAGACAAAGACGGGTCGCTTGCAGCGCACTGGACTCCTAGATGAGCCGAATAACACACACCTGACCACGGTTGTTATGCCACCGGTGCAACTGCAGCACGATGAGGCCGCCTACTTGGATGCTGCCGGCGAAAGTGCTCAAGCTGCTGCACCCACAGCGGCACCCTTTGGTGCCTTTAACATAGCGCCTGTCGTAATGGGTAATGGCAATAACAGCCAACAAAGCAACCCCAGTGGAAGTGAAGCGGGCAAATAA
- Protein Sequence
- MPDTETAPYDQFDAERVCRVCLREVGDFYFIYDEAPVEQGANIAQILNECTRYTCERYDKMPHHMCDTCIKAACQAYRFKRDAEKAYRSLVAMLGCKPVSKPNSRDVCTQTELNSPMLPCGICDERCLDTLELRLHRNRKHKHVKELDLRCRLCDAQFQQFRQLHNHLMKQHDPQSATPSLHRTLECRDCERNFTRRDHLLRHMRLVHNLQKLDGRRSRQKVTVVQEEDQDSSTTAWPPIDEATMQSGDELESAAVLLNPNVCSDEDESNNDCHNNPISSNEEPDDEEVDAEAKQSLWLHIKPEPETELDSTTQLEPEPDLDQVKREKLRKKAKLIVDEVDNQTVVKEEPLGVAPVQGEQQLPIKEERQHVEGIHDNEEDIYELDAAAVADMLHSTDEEDEDEQLYDDNEDDDGEEDDDDATNEQPNPDSKSENNLLKLPLGGQVDIVREYLEEPSQGGKLQRRRRRRKQPADGETNPENRCEVCQRTFSRHCHLLRHKLSHLEKKPHSCPHCPKEFARSDHLKAHVQSLHGNKEHKCVLCEAAFTRPDALERHKLSKHNGEGLDASSELKIQMSEHTCEYCAKRFSSKTYLRKHTLLHTEFLYACKSCDETFKERQQLRSHEKTHTGQRNFLCCICGDSFARNDYLRVHMRRHNGEKPYKCRYCVKAFPRATDLKVHERYHTGTKPNLCNTCGKSFHRAYNLTIHMRTHTGERPYKCEQCPKSFSQSNDLKAHIRRHTGERYKCPHCDTYFLQLYHMRNHCLSAHNKHIETKTGRLQRTGLLDEPNNTHLTTVVMPPVQLQHDEAAYLDAAGESAQAAAPTAAPFGAFNIAPVVMGNGNNSQQSNPSGSEAGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01554107;
- 90% Identity
- -
- 80% Identity
- -