Yseq017751.1
Basic Information
- Insect
- Ypsolopha sequella
- Gene Symbol
- lrrfip2
- Assembly
- GCA_934041175.1
- Location
- CAKOGU010000570.1:915808-928502[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4e-76 8.1e-72 243.2 21.4 1 275 29 300 29 321 0.88 2 2 2 4.1e+04 -6.4 12.3 119 170 333 384 326 396 0.64
Sequence Information
- Coding Sequence
- ATGTGTGCGGGAATAGACGCGATTGTGTGCGTGCTGGACGAAAATGAAGGGTTTTGTGTGGACGTTGCCGAGGTCCAACATGTGGCGGAGCAGCGGCTGGCGGCGCGGCGCGCGGCAAGGGCGGAGGCGCGCGAGATTCGCATGCGCGAGCTGGAGCGTCAGCAACGGGAGCAGGAGGACCATGCAGACAAGGCCTACGACATGTACACAGGTGGTCGGGTTCCAGACACGTCGGTGCGGCGCGCGGGGGGGCGGCTAGCGGCGCTCAGTCCCGCCGGCAGTCTGCACTCGCCGCGGCGCTGCTCTGAGGACTCCAACGATGACGTCATGGGACTCAAAGAGATGAGGCACGAGTTGAAAGAAGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAACTCGACAACGACAAGGCGGCGCTTGGCTACCAGCTCGAGCTGCTCAAGGACAGGATAGAGGAGCAGTTGGAGGAGACGCAGCAGTTGCAGCGAGAACACAGAGAGAAGTGCTCAGCGCATGAGCGTTTAAAACGCGAGCACTTGTCGCTGGAGCGAGAGCTGGCGGCGGCGCGGGATGCGGTGCGGGCGCGGGACGCCGCCGCTACCGCCGCCGGTCACGCCTTCGTGGAGGCGACGCCCGAGACAGCGCCCGAGCTCGTCGGGTGCAGCTTCGGGTCGGTGCCGCCGCTCGCACTCGTCACTCTCGAGTCCGAGCAGCTGCTCAATGACGCCGGAGAAGGGACCTTAGACGTGCGGTTGCAGAAGCTGCTCACATCGAAGCAGTCCCTGGAGTCAGAAGTGCGCAAGTTGAAGTTGCAGTTGAACGAGGAGCGCGCGGCGAGACAGAACGGGGTCGCCAGCCATCACGACGCCGAGTACGAAAACGAATTGGAAGTAGTCCGCAAGTCGCTAGCGGAGGCAAAGGCGCGGGCGGCTCGGGGCGAAGCGGAGGCGGCGCTGCAGGGCGCGGCGGTGGCGCGGTTTGAGGCGCAAGTGTCGCGGCTTCGAGCGCGCCAGGAGGACCAGGATGAGCGGGAGGAGCTGCTCAAACAGGAGAAGCGACGTCTGCAGAGAGAGGCGAGGGAGGCATTAAACCGCGTCGAGGAGCTCGAGACAGAGAACAATCATCTCACGAAGCGACTCGACAAACTGAAGAACGCAAAGTCTGCGCTGCTGAAGGAGCTGTGA
- Protein Sequence
- MCAGIDAIVCVLDENEGFCVDVAEVQHVAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYTGGRVPDTSVRRAGGRLAALSPAGSLHSPRRCSEDSNDDVMGLKEMRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEEQLEETQQLQREHREKCSAHERLKREHLSLERELAAARDAVRARDAAATAAGHAFVEATPETAPELVGCSFGSVPPLALVTLESEQLLNDAGEGTLDVRLQKLLTSKQSLESEVRKLKLQLNEERAARQNGVASHHDAEYENELEVVRKSLAEAKARAARGEAEAALQGAAVARFEAQVSRLRARQEDQDEREELLKQEKRRLQREAREALNRVEELETENNHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00651756;
- 90% Identity
- -
- 80% Identity
- -