Yror018275.1
Basic Information
- Insect
- Yponomeuta rorrellus
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_947308005.1
- Location
- OX371002.1:19410236-19429799[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.8e-74 7.5e-70 236.1 31.3 1 280 121 395 121 407 0.88 2 2 0.4 1.1e+04 -4.0 10.2 130 226 433 470 410 483 0.42
Sequence Information
- Coding Sequence
- ATGGGGCGGAGCTCTAAACTCGTCATGTCCGACAACAGTGATGAGGAGAGCGGCGAAGCCTTCACTGACGGAGACTTCGGTGACTCTGACGAGGATAATACCGTTGTAGAACTTGCGGACTCCAGGGGCGTCGCGGCTAACGAGACCATGAATCCTGAATTGAAGACCAACGGAGAAACGAACGGTGTGCACGTAACTGACGGCTTGAGACGTCAAAACAGTGCAAACGGACTAAATGGTGATACGAACGGACTGAACAATAACAATAAGGGTGAAAATGGTGTGCCAGAGATCCGGAGAGACTCTCACGGTGATCAGAATCCGTCAATTGTTGGAATAATTGGCGATCAACATGGATTTGCGGAGCAGCGGCTGGCGGCGCGGCGGGCGGCACGCGCCGAGGCGCGCGAGATCCGCATGCGCGAGCTGGAGCGGCAGCAGCGCGAACAGGAGGACCATGCTGACAAGGCCTACGACATGTATGCAGAGACGGTGACGAGGCGTGGCGGCGGGCGGCTGGCCTCGCTCACGCCGGCCGCGCTGCACTCGCCGCGCCGCAGCTCCGAGGACTCGCTCGACGAGAGTTTCAGCCTCAAGGAGCTGAGGCATGAACTGAAGGAAGTGGAGGAGAAGTTCCGCAAGGCGATGATTCTGAACGCGCAGTTGGACAACGACAAGGCGGCGCTCAACTACCAGCGCGAGCTGCTCAAGGACCGGATAGAGGAGCAGCGGGAGGAGATGGCGCAATTACAGCGCGAACACAAAGAGAAGTGCTCGGCGCACGAGCGCTTAAAACGCGAGCACGTCTCGCTGGAGCGCGAGCTTGAGGCGGCGCGGGACGCGGTGAGGGCGCGGGACGCCGCCGCCGCCGCCGCCGGACGCGCCTTCGTGGAGGCCTCGGTGGACACCGCGCCCGAGCTGCAGGGCGCCAGCTTCGGCACCTGTCCGCCGCTCGCGCTCGTGTCGCGGGACACTGAGCAGTTACTGGGCGAGGCGGGAGAGGGGACGCTGGACGTGCGGTTGCAGAAGCTGATCGCGTCGAAGCAGGCGCTGGAGTCGGACGTTCGCAAGCTGAAGTTGCAGCTGCACGACGAGCGGGCGGCGCGCCAGAACGGGCAGGCCAACCATCACGAGCTCGAGTTTGAGAACGAATTGGAGTCGCTCCGCAAGTCGCAGGCGGAGGCGAAGGCGCGGGCGGCGCGCGCCGAGGCGGAGGCGGCGCTGCAGGGCGCGGCCGTCGCGCGGCTCGAGGCGCAGGTCGCCCGCCTGCGCGCGCAGCACGACGCGCAGGACTCCCACGAGGAGCAGCTCAAGCAGGAGCGCCGCCGGCTGCAGCGCGAGGCGCGCGAGGCCCAAAACCGCGTGGAAGAACTGGAGACGGAGAACAGTCACCTCAACAAGCGACTCGACAAACTGAAGAACGCCAAGTCTGCACTGCTCAAGGAGCTGTGA
- Protein Sequence
- MGRSSKLVMSDNSDEESGEAFTDGDFGDSDEDNTVVELADSRGVAANETMNPELKTNGETNGVHVTDGLRRQNSANGLNGDTNGLNNNNKGENGVPEIRRDSHGDQNPSIVGIIGDQHGFAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVTRRGGGRLASLTPAALHSPRRSSEDSLDESFSLKELRHELKEVEEKFRKAMILNAQLDNDKAALNYQRELLKDRIEEQREEMAQLQREHKEKCSAHERLKREHVSLERELEAARDAVRARDAAAAAAGRAFVEASVDTAPELQGASFGTCPPLALVSRDTEQLLGEAGEGTLDVRLQKLIASKQALESDVRKLKLQLHDERAARQNGQANHHELEFENELESLRKSQAEAKARAARAEAEAALQGAAVARLEAQVARLRAQHDAQDSHEEQLKQERRRLQREAREAQNRVEELETENSHLNKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01544902;
- 90% Identity
- iTF_01544902;
- 80% Identity
- -