Ypad005912.1
Basic Information
- Insect
- Yponomeuta padella
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_947311075.1
- Location
- OX371236.1:19463395-19480043[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4e-74 6e-70 236.4 31.5 1 280 121 395 121 407 0.88 2 2 0.48 1.2e+04 -4.3 10.5 130 226 433 470 410 483 0.42
Sequence Information
- Coding Sequence
- ATGGGGCGGAGCTCCAAACTCGTCATGTCCGACAACAGTGATGAGGAGAGTGGCGAAGCCTTCACTGACGGAGACTTCGGTGACTCTGACGAGGATAATACCGTTGTAGAACTTGCGGACTCCAGGGGCGTCGCGGCTAACGAGACCATGAATCCTGAATTAAAGACCAACGGAGAAACGAACGGTGTGCACGTAACTGACGGCTTGAGACGTCAAAACAGTGCAAACGGACTAAATGGTGATACGAACGGACTGAACAATAACAATAAGGGTGAAAACGGTGTGCCAGAGATCCGGAGAGATTCTCACGGTGATCAGAATCCGTCAATTGTTGGAATAATTGGCGATCAACATGGATTTGCGGAGCAGCGGCTGGCGGCGCGGCGGGCGGCACGCGCCGAGGCGCGCGAGATCCGCATGCGCGAGCTGGAGCGGCAGCAGCGCGAACAGGAGGACCATGCTGACAAGGCCTACGACATGTATGCAGAGACGGTGACGAGGCGTGGCGGCGGGCGGCTGGCCTCGCTCACGCCGGCCGCGCTGCACTCGCCGCGCCGCAGCTCCGAGGACTCGCTCGACGAGAGTTTCAGCCTCAAGGAGCTGAGGCATGAACTGAAGGAAGTGGAGGAGAAGTTCCGCAAGGCGATGATTCTGAACGCGCAGTTGGACAACGACAAGGCGGCGCTCAACTACCAGCGCGAGCTGCTCAAGGACCGGATAGAGGAGCAGCGGGAGGAGATGGCGCAATTACAGCGCGAACACAAAGAGAAGTGCTCGGCGCACGAGCGCTTAAAACGCGAGCACGTCTCGCTGGAGCGCGAGCTTGAGGCGGCGCGGGACGCGGTGAGGGCGCGGGACGCCGCCGCCGCCGCCGCCGGACGCGCCTTCGTGGAGGCCTCGGCGGACACCGCGCCCGAGCTGCAGGGCGCCAGCTTCGGCACCTGTCCGCCGCTCGCGCTCGTGTCGCGGGACACTGAGCAGTTACTGGGCGAGGCGGGAGAGGGGACGCTGGACGTGCGGTTGCAGAAGCTGATCGCGTCGAAGCAGGCGCTGGAGTCGGACGTTCGCAAGCTGAAGTTGCAGCTGCACGACGAGCGGGCGGCGCGCCAGAACGGGCAGGCCAACCATCACGAGCTCGAGTTTGAGAACGAATTGGAGTCGCTCCGCAAGTCGCAGGCGGAGGCGAAGGCGCGGGCGGCGCGCGCCGAGGCGGAGGCGGCGCTGCAGGGCGCGGCCGTCGCGCGGCTCGAGGCGCAGGTCGCCCGCCTGCGCGCGCAGCACGACGCGCAGGACTCCCACGAGGAGCAGCTCAAGCAGGAGCGCCGCCGGCTGCAGCGCGAGGCGCGCGAGGCCCAAAACCGCGTGGAAGAACTGGAGACGGAGAACAGTCACCTCAACAAGCGACTCGACAAACTGAAGAACGCCAAGTCTGCACTGCTCAAGGAGCTGTGA
- Protein Sequence
- MGRSSKLVMSDNSDEESGEAFTDGDFGDSDEDNTVVELADSRGVAANETMNPELKTNGETNGVHVTDGLRRQNSANGLNGDTNGLNNNNKGENGVPEIRRDSHGDQNPSIVGIIGDQHGFAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVTRRGGGRLASLTPAALHSPRRSSEDSLDESFSLKELRHELKEVEEKFRKAMILNAQLDNDKAALNYQRELLKDRIEEQREEMAQLQREHKEKCSAHERLKREHVSLERELEAARDAVRARDAAAAAAGRAFVEASADTAPELQGASFGTCPPLALVSRDTEQLLGEAGEGTLDVRLQKLIASKQALESDVRKLKLQLHDERAARQNGQANHHELEFENELESLRKSQAEAKARAARAEAEAALQGAAVARLEAQVARLRAQHDAQDSHEEQLKQERRRLQREAREAQNRVEELETENSHLNKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01546668;
- 90% Identity
- iTF_01546668;
- 80% Identity
- -