Yror016887.1
Basic Information
- Insect
- Yponomeuta rorrellus
- Gene Symbol
- sip1
- Assembly
- GCA_947308005.1
- Location
- OX371012.1:11773760-11784546[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.1e-56 5.4e-52 177.6 2.2 2 275 371 626 370 626 0.97
Sequence Information
- Coding Sequence
- ATGTCGGACGACGAGGTTATGAAGTTTGAAATCACTGACTACGATTTGGATAACGAATTTAACACACATAGGCCAGGAGGCAGGAAGAATAAGAAAGAACACCAGATCTATGGAGTCTGGGCTAAGGACAGTGATGAGGAAGATAATGAAGACAATGTTCGGCAGCGTGTCCGCAAACCGAAAGATTACTCAGCACCAATTGGCTTTGTTACTGGCGGGGTGCAACAGGCTGGCAAGAAAAAAGAAGAAAAGAAAGCCACAAAGGAGCTGAAACCGTCCGAAACGACGACGTCGCGTCCTGTTTACGTGGACAGCTCAGACGAGGACGCTCCGACGAATCCAGATGAGTCGGAGACGGCCGGCATCCGACGCGCCGGACAGGGTATGCGCACGGCCAACCTTGGTGGCAGTGTAGGCACTTGGGAAAAGCACACCAAGGGGATTGGAGCCAAGCTTCTCTTACAGATGGGCTACCAACCAGGCAAAGGTCTGGGCAAGGACCTCCAGGGCATATCAGCCCCTGTGGAGGCTACTGTGAGGAAGGGCAGAGGTGCCATTGGCGCATATGGACCTGAGAAAGCTGCTTTGAAAGCAAAGAAAGAAGAAGAGAAGAGACTAAAAGAGAAGGAAGATGAAGAGAAAGAACCAGGGGAGAAGTCCTACCATTGGAAAAAGTCCCACAAAGGGAGATACTTCTACAAGGATGCAGCTGACATAATACAGGAGGGAAAGCCTACCATGCACACTATCACAAGCAACGAGCTGGCACGCGTGCCCGTGATCGACATGACGGGCCGCGAGCGGCGTGTGCTCAGCGGCTACCACGCGCTGCGGGCCAGCGTGCCGCTTTACGAGCACGAGCCGCGCCGCCGCTGCGAGCGGTTCGCGGCGCCCGAGCTGCTCCACAACCTGCAGCTAATGCTGGAGTGTACCGAGCAGGACATAATCCAGAACGCGCGCGAGCTGCACCAAGCCGAGGACGAGATCGTGGTGCTGGAGCGAGACTTGGCCGAGTGCGACATCAAGCTGAAGGAGCACGATGACGTCATAGACAAGGTGCAGGCGATACTGGCCAGGGCTGAGGTGTTGCACCAGCCGGACGTCTCGCTGGAGAGCGCCTACGAGATATTGGCTGATTTGAAGGAGACATACCCGCTAGAGTACGAGATGTTCGGCCTGGGTACCATAGCTGGCACCATCATATCCCCGCTGCTGAGCAGTCTGCTAGCGGCGTGGGAGCCACTGGCTGCGGCCGGCGACCCGTTGCCGACGTTCACAAAGTGGCGCCCTCTCCTGACTACTGAGGCATACAACAGTCTACTCTGGCAGCACTTCGTGCCGCATATAGAGCGGGCCGCAGAGCTGTGGAACCCGCGCGTGCCGGGCCCGATGCAGCGCGTGTTCGCGGCGTGGGCGGCGGCGTGCCCGGCGTGGCTGCTGCGGCAGGCGGCGGCGCGCTGCGTGGTGCCGCGCGTGCTGTCGGCGGCGCGCGTGTGGGACCCCACTGGGGACACGCAGCCGCTGCACGCCTGGGTGCTGCCCTGGCACGAGCTGGCAGGCGACGCGTTAGCCACGGCCGTGTACCCGCTGATCCGGTCGCGGCTGGCGACGGCGCTGGCGGCGTGGCACCCGGCGGACGGCTCGGCGCGTCCGCTGCTCGCCGTCTGGCGCGACGCGTGGGGCCCGGCGCTCACGGCCTTGCTGCACCAGCATATCGTGCCCAAGCTGGAGCATTGTCTGCAGCACGCGGCCGTGGAGCTGCTGGGAAGGGAGAACACGGCGTGGCTATGGTGTGCGTCGTGGCTGCCGTTGCTCGGGGCGCCCACGGTGGCCGCGGTCGCGTCGCGAGCACTGCTGCCGCGCTGGTTGGCGGCGCTGGCCGCGTGGCTCAACACCAACCCGCCGCACGCCACTGTTCTGAAGAGCTACACGGATTTCAAGGTACGTGCCAACTAG
- Protein Sequence
- MSDDEVMKFEITDYDLDNEFNTHRPGGRKNKKEHQIYGVWAKDSDEEDNEDNVRQRVRKPKDYSAPIGFVTGGVQQAGKKKEEKKATKELKPSETTTSRPVYVDSSDEDAPTNPDESETAGIRRAGQGMRTANLGGSVGTWEKHTKGIGAKLLLQMGYQPGKGLGKDLQGISAPVEATVRKGRGAIGAYGPEKAALKAKKEEEKRLKEKEDEEKEPGEKSYHWKKSHKGRYFYKDAADIIQEGKPTMHTITSNELARVPVIDMTGRERRVLSGYHALRASVPLYEHEPRRRCERFAAPELLHNLQLMLECTEQDIIQNARELHQAEDEIVVLERDLAECDIKLKEHDDVIDKVQAILARAEVLHQPDVSLESAYEILADLKETYPLEYEMFGLGTIAGTIISPLLSSLLAAWEPLAAAGDPLPTFTKWRPLLTTEAYNSLLWQHFVPHIERAAELWNPRVPGPMQRVFAAWAAACPAWLLRQAAARCVVPRVLSAARVWDPTGDTQPLHAWVLPWHELAGDALATAVYPLIRSRLATALAAWHPADGSARPLLAVWRDAWGPALTALLHQHIVPKLEHCLQHAAVELLGRENTAWLWCASWLPLLGAPTVAAVASRALLPRWLAALAAWLNTNPPHATVLKSYTDFKVRAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01222492;
- 90% Identity
- iTF_01561135;
- 80% Identity
- iTF_01544900;