Yror003297.1
Basic Information
- Insect
- Yponomeuta rorrellus
- Gene Symbol
- -
- Assembly
- GCA_947308005.1
- Location
- OX371004.1:19397701-19409136[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.2e-09 7.6e-07 29.3 0.0 4 39 183 219 180 223 0.88 2 4 1.7e-11 1.1e-08 35.2 0.6 4 39 237 272 235 275 0.93 3 4 5.6e-15 3.6e-12 46.3 0.0 2 45 290 334 289 334 0.97 4 4 3.5e-17 2.3e-14 53.4 0.0 2 43 342 384 341 386 0.93
Sequence Information
- Coding Sequence
- ATGGAGGCACGTCGGCATCTGCACCTTGCCAAACTACTCTTTGGTGTGATACGGACAAAAACCCAAAAACCCACCCATCCTATTTGTTCGCAAAGCTTGAATGGTCCACCAGACAACGGTATGCACAACGAAAAGATCCTGACACCGGTGCATCGGACCATGGCTTTCCGTGGTAGTTTCAGGAGAAGTCCTGTGCTCTGCAGCGGGATGTATGCTATTATACATATTTTGGGGCAGGAAGCGCCATGCTTGGAGGAACTGGGCGGGCCAGCGCCAGCCGCGCCATCCGCTACGCCCGTCTGCGTCAAACAGGAGCCCCTGGACGTCGCCGCCGCGTCACTCGAGACACTCGAGCCCGCGCCGCATACAAGTTCAGCGCTCCAGCTATCGCTCATCAGTTCGAGTGAGCTCCAGGCGGAGTTCATGCCATTACTGGCCGTTAAAGATGAGCCCATCTCCGAAGAGCAGCACCAACTGAGCGGGTCTGACACAAGCGACTCATGCGGTGGCGATGCGGCCCGCAGCCCTAAGAGCTGGACCCAGAAAGACATGGAGAACGCACTCGACGCTCTGAAAACTCAAAACATGAGCCTGACCAAGGCGTCGGCCCGGTACGGCATCCCGTCGACGACGCTGTGGCAGCGGGCGCACCGGCTGGGCATCGACACGCCGAAGCGCGAGGGCGCCGCCAAGTCGTGGGCCGCCGCCGACCTGCGCGCCGCCCTGCACGCGCTGCGCGCCGGCGCCATCTCCGCCAACAAGGCCAGCAAGGCTTACGGCATCCCCAGCAGTACGCTGTACAAGATAGCGCGGCGCGAGGGCATCCGCCTCGCCGCGCCCTTCAACGCCGCGCCCACCAGCTGGCGGCACGAGGACCTCGACCGCGCCCTACACGCCATACGGGCCGGACACGCCTCCGTGCAGCGCGCCTCCGCGCAGTTCGGGATCCCCACGGGCACGCTGTACGGGAGATGCAAACGCGAGGGCATTGAGCTATCCCGCTCCAACCCCACGCCGTGGTCCGAAAACGCTATGGGGGAGGCGCTAGAGGCTGTGAGAGTTGGTCAGATGTCGATAAATCAAGCTGCTATCCACTACAACCTGCCATATTCTTCTCTGTATGGTCGGTTCAAACGCTGCAAATATCCACAGAGTCCCCAGCAGCCGCACCAGCCGGCGCCGGAGCACCCCGACCCGGAGCCGCAGTTCCCCCCCTACCAGCCGTACCCCCCCGCCCCGGGGCCGTCGCCGTACCCCCCGCACCCGCTGGGGGGGCACTCGCTGATGCCCCACGAGCCAGGCCCGGCGGGAGAGGAAATGGGGCACCAACTGGTGAGTGAGCAGTTCGCCATGTACTACGGACAGGGGATCGCCACCAGTTGA
- Protein Sequence
- MEARRHLHLAKLLFGVIRTKTQKPTHPICSQSLNGPPDNGMHNEKILTPVHRTMAFRGSFRRSPVLCSGMYAIIHILGQEAPCLEELGGPAPAAPSATPVCVKQEPLDVAAASLETLEPAPHTSSALQLSLISSSELQAEFMPLLAVKDEPISEEQHQLSGSDTSDSCGGDAARSPKSWTQKDMENALDALKTQNMSLTKASARYGIPSTTLWQRAHRLGIDTPKREGAAKSWAAADLRAALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTSWRHEDLDRALHAIRAGHASVQRASAQFGIPTGTLYGRCKREGIELSRSNPTPWSENAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYPQSPQQPHQPAPEHPDPEPQFPPYQPYPPAPGPSPYPPHPLGGHSLMPHEPGPAGEEMGHQLVSEQFAMYYGQGIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01543811; iTF_01542876; iTF_01544796;
- 90% Identity
- iTF_01544796;
- 80% Identity
- -