Ypad016244.1
Basic Information
- Insect
- Yponomeuta padella
- Gene Symbol
- -
- Assembly
- GCA_947311075.1
- Location
- OX371238.1:19332657-19350190[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8.7e-10 6.2e-07 29.5 0.0 4 39 138 174 135 178 0.88 2 4 1.2e-11 9e-09 35.4 0.6 4 39 192 227 190 230 0.93 3 4 4.1e-15 3e-12 46.5 0.0 2 45 245 289 244 289 0.97 4 4 2.6e-17 1.9e-14 53.6 0.0 2 43 297 339 296 341 0.93
Sequence Information
- Coding Sequence
- ATGCCCGGCTACGGGTTGCCTCATGTGAAGTGCGAACCCCCATCTGAATCGGATGACGATGACAGCAATTCACAATTCCCGCAAAAGTTTCTCATACATCAGGAAGCGCCATGCCTGGAGGAACTGGGCGGGCCAGCGCCAGCCGCGCCATCCGCTACGCCCGTCTGCATCAAACAGGAGCCCCTGGACGTCGCCGCCGCGTCACTCGAGACACTCGAGCCCGCGCCGCATACAAGTTCAGCGCTCCAGCTATCGCTCATCAGTTCGAGTGAGCTCCAGGCGGAGTTCATGCCATTACTGGCCGTTAAAGATGAGCCCATCTCCGAAGAGCAGCACCAACTGAGCGGGTCTGACACAAGCGACTCATGCGGTGGCGATGCGGCCCGCAGCCCTAAGAGCTGGACCCAGAAAGACATGGAGAACGCACTCGACGCTCTGAAAACTCAAAACATGAGCCTGACCAAGGCGTCGGCCCGGTACGGCATCCCGTCGACGACGCTGTGGCAGCGGGCGCACCGGCTGGGCATCGACACGCCGAAGCGCGAGGGCGCCGCCAAGTCGTGGGCCGCCGCCGACCTGCGCGCCGCCCTGCACGCGCTGCGCGCCGGCGCCATCTCCGCCAACAAGGCCAGCAAGGCTTACGGCATCCCCAGCAGTACGCTGTACAAGATCGCGCGGCGCGAGGGCATCCGCCTCGCCGCGCCCTTCAACGCCGCGCCCACCAGCTGGCGGCACGAGGACCTCGACCGCGCCCTGCACGCCATACGGGCCGGACACGCCTCCGTGCAGCGCGCCTCCGCGCAGTTCGGGATCCCCACGGGCACGCTGTACGGGAGATGCAAACGCGAGGGCATTGAGCTATCCCGCTCCAACCCCACGCCGTGGTCCGAAAACGCTATGGGGGAGGCGCTAGAGGCTGTGAGAGTTGGTCAGATGTCGATAAATCAAGCTGCTATCCACTACAACCTGCCATATTCTTCTCTGTATGGTCGGTTCAAACGCTGCAAATATCCACAGAGTCCCCAGCAGCCGCACCAGCCGGCGCCGGAGCACCCCGACCCGGAGCCGCAGTTCCCCCCCTACCAGCCGTACCCCCCCGCCCCGGGGCCGTCGCCGTACCCCCCGCACCCGCTGGGGGGGCACTCGCTGATGCCCCACGAGCCAGGCCCGGCGGGAGAGGAAATGGGGCACCAACTGGTGAGTGAGCAGTTCGCCATGTACTACGGACAGGGGATCGCCACCAGTTGA
- Protein Sequence
- MPGYGLPHVKCEPPSESDDDDSNSQFPQKFLIHQEAPCLEELGGPAPAAPSATPVCIKQEPLDVAAASLETLEPAPHTSSALQLSLISSSELQAEFMPLLAVKDEPISEEQHQLSGSDTSDSCGGDAARSPKSWTQKDMENALDALKTQNMSLTKASARYGIPSTTLWQRAHRLGIDTPKREGAAKSWAAADLRAALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTSWRHEDLDRALHAIRAGHASVQRASAQFGIPTGTLYGRCKREGIELSRSNPTPWSENAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYPQSPQQPHQPAPEHPDPEPQFPPYQPYPPAPGPSPYPPHPLGGHSLMPHEPGPAGEEMGHQLVSEQFAMYYGQGIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01546560;
- 90% Identity
- iTF_01543811; iTF_01542876; iTF_01546560;
- 80% Identity
- iTF_01542876;