Yplu027262.1
Basic Information
- Insect
- Yponomeuta plumbellus
- Gene Symbol
- -
- Assembly
- GCA_947310845.1
- Location
- OX371221.1:1476684-1489276[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.14 13 7.3 0.4 2 23 101 121 100 121 0.96 2 24 0.11 11 7.6 2.2 1 23 127 150 127 150 0.96 3 24 0.0022 0.2 13.0 2.9 1 23 168 191 168 191 0.96 4 24 0.073 6.8 8.2 3.1 1 20 197 216 197 218 0.94 5 24 0.087 8.1 8.0 0.7 1 23 320 342 320 342 0.98 6 24 0.0005 0.047 15.0 3.0 1 23 346 368 346 368 0.98 7 24 0.12 11 7.5 1.0 1 23 401 423 401 423 0.98 8 24 0.0034 0.31 12.4 0.1 1 23 429 452 429 452 0.97 9 24 1.3e-05 0.0012 20.0 1.1 1 23 516 538 516 538 0.98 10 24 0.006 0.55 11.6 1.8 1 23 544 567 544 567 0.95 11 24 0.0099 0.92 10.9 5.3 1 23 580 602 580 602 0.98 12 24 0.045 4.2 8.8 1.0 1 23 610 632 610 632 0.98 13 24 0.22 21 6.7 2.3 1 23 644 667 644 667 0.97 14 24 0.082 7.6 8.0 3.2 1 23 795 818 795 818 0.97 15 24 0.067 6.2 8.3 1.0 1 21 825 845 825 846 0.94 16 24 0.00055 0.051 14.9 3.6 1 23 878 900 878 900 0.98 17 24 0.0016 0.15 13.4 0.6 1 23 905 927 905 927 0.97 18 24 0.044 4.1 8.9 1.1 1 23 933 956 933 956 0.94 19 24 0.089 8.2 7.9 0.6 1 23 966 989 966 989 0.95 20 24 0.0037 0.35 12.3 0.4 1 23 1086 1108 1086 1108 0.98 21 24 0.29 27 6.3 1.5 1 23 1127 1150 1127 1150 0.93 22 24 0.045 4.2 8.9 0.6 1 23 1171 1194 1171 1194 0.95 23 24 3.9 3.6e+02 2.8 2.5 1 23 1209 1232 1209 1232 0.86 24 24 0.037 3.5 9.1 1.3 1 23 1246 1269 1246 1269 0.96
Sequence Information
- Coding Sequence
- ATGTCTGCATCGGATAGCGATCCCACATTCGCTCGCGTCTGGGTGAAGGACGAACCGGACGAAAATATCGTCGATGAGGTTGATGGCATAGCCAGTGATGATCACGAAGATGATGATGACGAGGATGATGATGATGATGATGATGCAGAGACAGGACAAGTTGACATTGATCCTATGGGTATTGTGAAGAATGAATCGCCAACTTCAGAAGCAGAGGAATCAGATGAGTACCGGAAGCCCAAGAAAGTCAAACGAAAATGCATGCCCAAAAAGGGTTCGCAGCGTAAAGGCGAGAAGCTGAAGTGTCCTTTCTGTTCGTACGAAGGCAAGCCTAAATTGCTCAAAGCGCACATTAGGAAACACACCAACAAAAAGGAGTTCAAGTGTCCGTTCTGTAGTTTCAACACGAACTATGACACAGCGTTGCGGAGGCATTTGAAGTTGAAGCATTCGGGGGACAGCGACGAGGAAAAGAAGGTGAAGAAGGTCCATTTGAAGAAATTCCAGTGCAGTCTATGTCCCTACGTGACCGCTCACAGACACGGCCTGAAGAGTCACATGAAGGGGAAGCACCAGGATGAGAAGCCTTACGAGTGCAGCTTCTGCGATTACAAGACTAAGTACTCCACAGCGCTGCACCGGCATCGGTTCACACAGTTTCTCGACTTATTGGAAGACAATGAGGAAGAGGACGAGAGCGAGGGGGAGTTGGAGGTTGAGCTGGAGGAGGAGGAGGAGGACGAGGAGGAGACTGGGGTGGCAAACCTGATGGCAATGGACATCATGGTGGAGGAAGAGGACGGGGAGCTAGTGCCACTGGAGGCACTGAGCGTCCCACCTTCTACCTCTAGCAGGCTCTCCAGCAGCAGCAGTAGGGATGACGAAGTGCGCAGGGAGATGTTGCGCAATGTTATGCACAAAAACGAGGTGAAAGAATTGGGCGAAGCTTCCAGAGAGTTCAAATGCGGGAGCTGCGACTTTGTAGCCTTTCTCAATTCCGAGCTCAGACAGCATGAAAGGAAACACGTCCTAAAATTCCGCTGCAAACAGTGCGGCTATAAAACTGACACGGAAGAGGACCTACATCAGCACATGATGAAACATGACGATCCTAACTTCAAACCTTTAAAACTCAAATTGCCTTCAGTAAAGAAAGAGGCTTTGACTTCACAACTTGGCGGCAACACCACTGATCCAATATTCAAGTGCAAGATATGCGAACATGAATCTATAACCTACGCGGCGTTCCTAGAACACGTCAAGTCTCATGAAAAGGTCAATCCGTACAAGTGCAATGTGTGTGGATATGAAACCGCGTCCAATGTGACGTTCCTGGAACATTTGCAGGTTGAGCACGGAGTAACAGAGGATGGCATGAATGACGTTAAGGTCATCAGTGAAGGAATCATGAGCGCCATGCAAGCTATTTCGATAGGCGTGGCCCCAGACTCCGACGACGAACCGCTCGCCTCGCTCCCGTTCCACGACGATTCAGACGAGGAGCCAAAGCCCAAGCCGAAGCGAAAACGCCTCCTCAACAAAACCTTCTCTTGCGAGGTCTGCCCGTACTCCACAAAGTACAAGGACGCGCTCAAATCCCACATGCGTAAACACACCGAGGGTAAACCTTACAAATGCACCCTCTGCGACTACTCCAGCAAGTATCCCACTGCTATGCGGAGGCACAAGATGCTGAAACATCCGGAGAGCTTCTCCTCGGCTTCCAAACCTAAGGAGTACGTTTGCCACGAATGCAGCTATAGAACTTACTACAAGGCCAACCTCTTCCAGCACTTCCGGAAGCACAATCCGGACAAGGCCAAGCAGTTCAAGTGTGAGTCCTGCCCGTTCGCCACCGCGTACCAAACGGCCTTCTACAGACACCGGAAGATTCACAAGCGCAAGCTAGCGAACGGTCAGATCATCACGCACCAGTGTGACATGTGTCCGTATTCGACGCAGCACGAGGGCCGATTCGCTTGGCATATGCTGAAGACTCACAACAAAAGAGGCGTTTTTGAGAAAGGTATCAAGTGCGACTACTGTGACTTCGAAACGTATAAGAAGCTGAAGTTCCGACTCACGGCTCATCTGCAGAGGAGCAAGCAAATGATGCCGATGAAGTGTCTGCACTGCGATTTTGAGACTTACTACAAATGCCAGGTGAGGTTTCACAGGAAAACTCACTATCCGGAGCTGCAGACGATAACTCGGGTGCCTAAAACCGAGGACCAGAATCAGAACCCGCAGGAGAAAGTCGAAACTCCAGCGCCTAGTCTCAATCTCATCCTAGGCCATTGCAAGGAGGACAATTACGAAGTAGACTCCGCTATAGCGTGGAAGAAAATCCCCGTTTTAGAAAACAGAAGTCTCAACAAGCCGTTCTCCTGTTACAAGTGCTCGTACGCCTCACGCTTCAAGTCGTCAGTCCAGCGTCATTATCAGCGTCTCCACGGCAACAAAGCTAAGCCTTACCGCTGCAGTCATTGTGACTTTGGCACCTCGACTAAGGACTCCATCGCTCTGCACACGAAAAGGAGCAAACAGAACATAGCTATGCAGTGCGAATGCGGTCAATTCGCGACGTTCTACAAATGCGAGTTCGTCGTGCACCAAAAACTGCATAACCCTTACCGTTGCAGCAAATGCACTTACTCCTCCAAGTCCAAGTACGATTTGGAGCGCCATTACACGATGCACAGTAACAAAGGATACAAGTGTGAACATTGTGATTACGTCGCAGCGAGACGCGACACTCTATCGACTCATGCCGTGACCCATACCGGTATAAAACCTTACCAATGCCATCTGTGCCCTTACGGCACCATGAGACTGACGTTCTTAGAGAAACACATCATTGACAAACACGACGGCGATGCCTCAAAGACCAAACCCTTCCAATGCCATCTCTGCCCGTACGGATCGTTCAGACAGGGCGTCTTAGACCGGCACATACTTCAAGAGCACGCGGAGACGAACGACGTGGCTGCGGACGATTGCAACGACAACGTTCGCAATGACGTCGCTCAGAATGACGACTCGCACAATGACAATACGCAGAACGACGACGCGCATAACGACGACGACTCCATCGGTAACGTCGTTGACACGCAAACTTCGACTCTAAACTCAAGTTACTACGACCTTTCTACCCGTAATAATGTCACGATAGAAACCCCAGTCGTTGCCAGCGCAAACGATAGTCAGTACTCAACCCCGACAGAGAAGCTTATTCAGGATAAAGGCGTCAAGCCATTCCAGTGTACTGTGTGCCCGTACAGCGCTTTCAGCCCGAAAGTCTTGAAGAAACACATGACTATACACTCTGAAGTCCGCGTGGACAACATTGACGAAGCATCCGACGCGACGGTCAAGCCATTCCAATGCCATTTGTGTCCTTACAGCTCATTCCGCCCGAACATTTTGAAGAACCACCTGATCCTAAAGCACTCCATAACGCCCCCCGCAGGCTTCGTCGACGAGTATAACACTAAAACTACAGAGAAGACGTACCAGTGCCACATTTGCCCGTACAGTTCTATGAGTATCAACGTCCTGAACAAACACTTGGCGATAAAGCATGAAACCACAGCGGCCACCGCTCTTGAGAACACAGTCAAGACGTTTCAATGTCACCACTGCCCGTTTAACTCTTTGAACCCGAATGTATTGAAAAAACATGTGATTCAGTCGCACTCAGGCCGGACTGAGGTTCCGGCAGAGGGTGCTAAGCCGTTCCGATGCCAGTTGTGTCCGTACAGCTCTTTCAGTCCGAAGGTTTTGAGGAAGCATCTGATGCAGAAGCATACTGGTCTCCCAAGGACGGCGTTCGAAAGCTACAGCGACAATTCGGTGGAGGTCGTTAGCGTTGCTTCTGAAAACGACTGA
- Protein Sequence
- MSASDSDPTFARVWVKDEPDENIVDEVDGIASDDHEDDDDEDDDDDDDAETGQVDIDPMGIVKNESPTSEAEESDEYRKPKKVKRKCMPKKGSQRKGEKLKCPFCSYEGKPKLLKAHIRKHTNKKEFKCPFCSFNTNYDTALRRHLKLKHSGDSDEEKKVKKVHLKKFQCSLCPYVTAHRHGLKSHMKGKHQDEKPYECSFCDYKTKYSTALHRHRFTQFLDLLEDNEEEDESEGELEVELEEEEEDEEETGVANLMAMDIMVEEEDGELVPLEALSVPPSTSSRLSSSSSRDDEVRREMLRNVMHKNEVKELGEASREFKCGSCDFVAFLNSELRQHERKHVLKFRCKQCGYKTDTEEDLHQHMMKHDDPNFKPLKLKLPSVKKEALTSQLGGNTTDPIFKCKICEHESITYAAFLEHVKSHEKVNPYKCNVCGYETASNVTFLEHLQVEHGVTEDGMNDVKVISEGIMSAMQAISIGVAPDSDDEPLASLPFHDDSDEEPKPKPKRKRLLNKTFSCEVCPYSTKYKDALKSHMRKHTEGKPYKCTLCDYSSKYPTAMRRHKMLKHPESFSSASKPKEYVCHECSYRTYYKANLFQHFRKHNPDKAKQFKCESCPFATAYQTAFYRHRKIHKRKLANGQIITHQCDMCPYSTQHEGRFAWHMLKTHNKRGVFEKGIKCDYCDFETYKKLKFRLTAHLQRSKQMMPMKCLHCDFETYYKCQVRFHRKTHYPELQTITRVPKTEDQNQNPQEKVETPAPSLNLILGHCKEDNYEVDSAIAWKKIPVLENRSLNKPFSCYKCSYASRFKSSVQRHYQRLHGNKAKPYRCSHCDFGTSTKDSIALHTKRSKQNIAMQCECGQFATFYKCEFVVHQKLHNPYRCSKCTYSSKSKYDLERHYTMHSNKGYKCEHCDYVAARRDTLSTHAVTHTGIKPYQCHLCPYGTMRLTFLEKHIIDKHDGDASKTKPFQCHLCPYGSFRQGVLDRHILQEHAETNDVAADDCNDNVRNDVAQNDDSHNDNTQNDDAHNDDDSIGNVVDTQTSTLNSSYYDLSTRNNVTIETPVVASANDSQYSTPTEKLIQDKGVKPFQCTVCPYSAFSPKVLKKHMTIHSEVRVDNIDEASDATVKPFQCHLCPYSSFRPNILKNHLILKHSITPPAGFVDEYNTKTTEKTYQCHICPYSSMSINVLNKHLAIKHETTAATALENTVKTFQCHHCPFNSLNPNVLKKHVIQSHSGRTEVPAEGAKPFRCQLCPYSSFSPKVLRKHLMQKHTGLPRTAFESYSDNSVEVVSVASEND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01545143; iTF_01544238; iTF_01543232; iTF_01546912;
- 90% Identity
- -
- 80% Identity
- -