Ycag001265.1
Basic Information
- Insect
- Yponomeuta cagnagella
- Gene Symbol
- -
- Assembly
- GCA_947310995.1
- Location
- OX371297.1:1371168-1381246[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.063 4.5 8.5 0.2 2 23 106 126 105 126 0.96 2 24 0.0062 0.44 11.6 2.3 1 23 132 155 132 155 0.97 3 24 0.0037 0.26 12.3 2.2 1 23 173 196 173 196 0.96 4 24 0.29 21 6.4 7.5 1 23 202 225 202 225 0.96 5 24 0.058 4.1 8.6 1.1 1 23 239 261 239 261 0.98 6 24 5.3e-05 0.0038 18.1 1.3 1 23 265 287 265 287 0.98 7 24 0.2 14 6.9 1.1 1 23 321 343 321 343 0.98 8 24 0.0022 0.16 13.0 0.2 1 23 349 372 349 372 0.97 9 24 1.9e-05 0.0013 19.6 0.6 1 23 436 458 436 458 0.97 10 24 0.0058 0.41 11.7 1.8 1 23 464 487 464 487 0.95 11 24 0.0097 0.69 11.0 5.3 1 23 500 522 500 522 0.98 12 24 0.044 3.2 8.9 1.0 1 23 530 552 530 552 0.98 13 24 0.41 29 5.9 3.1 1 23 564 587 564 587 0.97 14 24 0.08 5.7 8.1 3.2 1 23 717 740 717 740 0.97 15 24 0.066 4.7 8.4 1.0 1 21 747 767 747 768 0.94 16 24 0.00053 0.038 15.0 3.6 1 23 800 822 800 822 0.98 17 24 0.0016 0.11 13.5 0.6 1 23 827 849 827 849 0.97 18 24 0.043 3.1 9.0 1.1 1 23 855 878 855 878 0.94 19 24 0.086 6.2 8.0 0.6 1 23 888 911 888 911 0.95 20 24 0.0037 0.26 12.4 0.4 1 23 1008 1030 1008 1030 0.98 21 24 0.28 20 6.4 1.5 1 23 1049 1072 1049 1072 0.93 22 24 0.044 3.1 8.9 0.6 1 23 1093 1116 1093 1116 0.95 23 24 3.8 2.7e+02 2.9 2.5 1 23 1131 1154 1131 1154 0.86 24 24 0.065 4.6 8.4 1.9 1 23 1168 1191 1168 1191 0.96
Sequence Information
- Coding Sequence
- ATGTCTGCTTCGGAAAATGATCCCACGTTCGCTCGCGTCTGGGTAAAGGACGAGCCGGATGAAAATATCGCAGATGAGATTGATGGCATAGCCAGTGATCATCGTGAAGACGACGATAACCTGGACAATGATGATGATGATGATGATGATGATGAATATACAGAGACAGCGCATGTGGACATTGATCCTATGGGTATTGTGAAGAATGAAACGCAAACTTCAGAAACAGAAGAACAGGATGATCACTGGAAGACAATTGAAGTCAAAGAGAAATGGGTGCCAAAAACGGGTTCGGAGCGTAAAGTAGAGAAGCTAAAGTGTCCGTTTTGCCCGTACGAAGGCAAGCCTAAATTGCTCAAAGCGCATATCAGGAAACACACAAACAAAAAGGAGTTCAAGTGTCCATTTTGTAGTTTCAACACGAACTACAATACGGCGTTGCGGAGGCATCTGAAGATTAAGCATTCGGGCGATAGTGACGATGAAAAAAAGGTGAAGAAGGTCCACATGAAGAAATTCCAGTGCGCCCTCTGCCCCTACGTGACAGCCCACAGGCACGGGCTGAAGAGTCACATGAAGGGGAAGCACCAGGACGAGAAGCCTCACCAGTGCAGCTTCTGCGATTACAAGACGAAGTACTCCACGGCGCTGCATCGGCATCGCTTCACGCAGCACAAGAACGAGGTGAAAGAATTGGGCGAAGCTTCCAGAGAGTTCAAATGCAGCAGCTGCGACTTCGTAGCCTTCCTCAACTCCGAGCTCAGACAGCATGAAAGGAAACACGTCCTGAAATTCCGCTGCAAACAGTGCGGCTACAAAACTGACACAGAGGAAGATCTGCAACAGCATATGATGAAACATGACGATCCTAATTTCAAAGCTTTTAAATTCAAAATGCCTTCAGTAAAGAAAGAAGCCGTGGTGACATCCCAACTTGGCGGCAACAGCACTGACCCAATATTCAAGTGCAAGATATGCGAACATGAATCTATAACCTACGTGGCGTTCTTAGAACACGTTAAATCTCATGAAAAGGTTGATCCGTACAAGTGCAATGTGTGCGGATATGAAACTGCGTCCAATACCACGTTCCTGGAGCATTTGCAGATAGCGCACGGAGTCACGGAGGATGGTATGAATGACGTCAAGGTCATTAATGAAGGAATCATGAGTGCGATGCAAGCTATTTCTATGGGCGTGACCCCAGACTCTGACGACGAGCCGCTAGCTTCCCTCCCCTTCCGCGACGACTCGGACGAAGAGCCGAAGGCCAAACCGAAGAGGAAACGCCTCCTTAACAAGACCTTCGCCTGCGAAGTCTGCCCGTATTCCACAAAGTACAAAGACGCTCTCAAGTCCCACATGCGAAAGCACACCGAAGGTAAACCGTACAAGTGCACCCTCTGCGATTACTCCAGCAAGTATCCCACCGCGATGCGCAGGCATAAGATGCTAAAACACCCGGAGAGCTTCTCGTCCGCTTCCAAACCGAAGGAGTACGTTTGCCACGAGTGCAGTTACAGAACTTACTACAAAGCCAACCTGTTCCAGCACTTCAGGAAACACAATCCGGACAAGGCTAAACAGTTCAAGTGCGAGTCCTGTCCGTTCGCTACGGCGTACCAGACGGCCTTTTACAGGCATCGTAAGATACACAAGCGTAAGTTAGCGAACGGTCAGATCATCACGCACCAGTGTGACATGTGTCCGTATTCAACGCAGCACGAGGGCCGCTTCTCTTGGCACATGCTGAAAACTCACAACAAAAGGGGCGTTTTCGAGAAGGGAATCAAGTGCGATTACTGTGACTTCGAGACGTACAAGAAACTGAAGTTCCGGCTCACGGCGCACCTTCAGAGGAGCAAGCAAATGATGCCGATGAAGTGTCTACACTGCGATTTCGAGACCTACTACAAATGTCAGGTGAGATTCCACAGGAAAACTCACTACCCGGAGTTGCAGAGTATAACTCGGGTGCCCAAAACTGAGGATGCCAGTCAGAATGCTAACCCGCCTGAGAACGTGGAAGCTCCAGCGCCGAGCCTCAATCTCATACTAGGGCATTGCAAAGAGGACAATTATGAAGTAGACTCCGCTATAGCGTGGAAGAAGATTCCCGTCTTAGAGAACAGAAGTCTTAACAAACCGTTCTCCTGTTACAAGTGCTCGTACGCCTCACGCTTCAAGTCGTCAGTCCAACGGCATTACCAGCGTCTCCACGGCAATAAAGCCAAACCATACCGCTGCAGCCATTGTGACTTTGGCACTTCAACAAAAGACTCCATCGCGCTGCACACTAAGCGGAGCAAACAGAATAATGCAATGGAATGCGAGTGCGGTCAATTCGCAACATTCTACAAATGCGAGTTTGTCGTTCACCAGAAACTGCACAACCCTTACCGTTGTAGCAAATGCACTTACTCTTCCAAGTCCAAATACGATTTGGAGCGTCATTATACGATGCACAGTAACAAAGGGTACAAGTGTGAACACTGCGATTACGTCGCGGCGCGGCGCGACACTTTATCGACTCACGCTGTGACCCATACCGGCATAAAGCCTTACCAGTGCCATCTGTGCCCTTACGGCACTATGAGGCTGACGTTCTTAGAGAAACACATTATTGATAAACACGACGGCGATGCCTCAAAGACTAAACCTTTCCAATGCCATTTGTGTCCGTACGGATCGTTCAGACAAGGCGTTTTGGACAGGCATATCCTTCAAGAGCACGCGGAGACGAACGATGTGGCTGTGGATGATTGCAACGATAATATTCAGAATGACGATGCTCAGAATAACGACACGCACAATGACAGTGCACAGAATGACGACACGCATACCGACGACGACTCCATCGGTAACGTCGTTGACACACAAACCCCGACCCTAAACACAAGTTACTACGATCTATCGACGCGCAATAATATCACGATAGAAAGCCCAGCCGTTGCCAACGCAAACGATAGTCAGTACTCTGCCCCGATGGAGAAACTAACGCAAGAAAAAGGCGTGAAACCTTTCCAGTGTACCGTGTGCCCTTACAGCGCTTTCAGTCCGAAAGTCTTGAAGAAACATATGACCATACACACGGATGTTCGCGTGGATAGCATAGACGAAGCCGCCGACGCGACAGTCAAGCCATTCCAATGCCATTTGTGTCCTTACAGCTCATTCCGCCCCAACATTCTGAAGAACCATCTGATTCTAAAACACTCCATAACACCCCCAGCGGGATTCGTCGACGAGTACAACACTAAAACAACCGAGAAGACCTACCAGTGTCACATTTGCCCGTACAGTTCCATGAGCATCAACGTCCTGAACAAACACTTGGCGATAAAACACGAGACCACGGCAGCAACCGCTCTTGAGAATACAGTCAAGACATTCCAGTGTCACCACTGCCCTTTCAACTCCTTGAACCCCAACGTTTTGAAAAAGCACGTGATACAGTCACACTCAGGGAGGTCGGAGGTGCAGACCGAAGGCGCCAAGCCATTCCGATGCCAGTTCTGTCCGTACAGCTCCTTCAGTCCGAAGGTTTTGAGGAAGCATCTGATGCAGAAGCACTCTGGCCTCCCGAGATCCGCGTTCGAAACTTACAGTGACAATTCGGTGGAAGTCGTGAGCGTTGCTTCCGAAAATGACTGA
- Protein Sequence
- MSASENDPTFARVWVKDEPDENIADEIDGIASDHREDDDNLDNDDDDDDDDEYTETAHVDIDPMGIVKNETQTSETEEQDDHWKTIEVKEKWVPKTGSERKVEKLKCPFCPYEGKPKLLKAHIRKHTNKKEFKCPFCSFNTNYNTALRRHLKIKHSGDSDDEKKVKKVHMKKFQCALCPYVTAHRHGLKSHMKGKHQDEKPHQCSFCDYKTKYSTALHRHRFTQHKNEVKELGEASREFKCSSCDFVAFLNSELRQHERKHVLKFRCKQCGYKTDTEEDLQQHMMKHDDPNFKAFKFKMPSVKKEAVVTSQLGGNSTDPIFKCKICEHESITYVAFLEHVKSHEKVDPYKCNVCGYETASNTTFLEHLQIAHGVTEDGMNDVKVINEGIMSAMQAISMGVTPDSDDEPLASLPFRDDSDEEPKAKPKRKRLLNKTFACEVCPYSTKYKDALKSHMRKHTEGKPYKCTLCDYSSKYPTAMRRHKMLKHPESFSSASKPKEYVCHECSYRTYYKANLFQHFRKHNPDKAKQFKCESCPFATAYQTAFYRHRKIHKRKLANGQIITHQCDMCPYSTQHEGRFSWHMLKTHNKRGVFEKGIKCDYCDFETYKKLKFRLTAHLQRSKQMMPMKCLHCDFETYYKCQVRFHRKTHYPELQSITRVPKTEDASQNANPPENVEAPAPSLNLILGHCKEDNYEVDSAIAWKKIPVLENRSLNKPFSCYKCSYASRFKSSVQRHYQRLHGNKAKPYRCSHCDFGTSTKDSIALHTKRSKQNNAMECECGQFATFYKCEFVVHQKLHNPYRCSKCTYSSKSKYDLERHYTMHSNKGYKCEHCDYVAARRDTLSTHAVTHTGIKPYQCHLCPYGTMRLTFLEKHIIDKHDGDASKTKPFQCHLCPYGSFRQGVLDRHILQEHAETNDVAVDDCNDNIQNDDAQNNDTHNDSAQNDDTHTDDDSIGNVVDTQTPTLNTSYYDLSTRNNITIESPAVANANDSQYSAPMEKLTQEKGVKPFQCTVCPYSAFSPKVLKKHMTIHTDVRVDSIDEAADATVKPFQCHLCPYSSFRPNILKNHLILKHSITPPAGFVDEYNTKTTEKTYQCHICPYSSMSINVLNKHLAIKHETTAATALENTVKTFQCHHCPFNSLNPNVLKKHVIQSHSGRSEVQTEGAKPFRCQFCPYSSFSPKVLRKHLMQKHSGLPRSAFETYSDNSVEVVSVASEND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01546028;
- 90% Identity
- iTF_01545143;
- 80% Identity
- -