Yplu008614.1
Basic Information
- Insect
- Yponomeuta plumbellus
- Gene Symbol
- -
- Assembly
- GCA_947310845.1
- Location
- OX371217.1:11405921-11409515[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0032 0.3 12.5 5.3 2 23 153 175 152 175 0.96 2 16 2.1e-05 0.0019 19.4 0.5 1 23 184 207 184 207 0.98 3 16 0.13 12 7.5 1.9 1 23 219 242 219 242 0.96 4 16 0.00065 0.06 14.7 1.5 1 23 251 274 251 274 0.98 5 16 0.00011 0.01 17.1 0.2 1 23 286 309 286 309 0.98 6 16 7.5e-05 0.007 17.6 0.3 2 23 337 359 336 359 0.96 7 16 0.00056 0.051 14.9 1.1 2 23 369 391 368 391 0.96 8 16 0.073 6.8 8.2 1.2 3 19 398 414 397 416 0.93 9 16 0.0021 0.2 13.0 0.7 2 21 422 441 422 444 0.94 10 16 0.0078 0.72 11.3 1.6 3 23 455 476 454 476 0.97 11 16 3.1e-05 0.0029 18.8 3.3 1 23 481 504 481 504 0.96 12 16 0.069 6.4 8.3 0.5 3 23 517 538 515 538 0.93 13 16 0.095 8.8 7.8 5.5 1 23 568 591 568 592 0.94 14 16 4.2e-05 0.0039 18.4 1.3 1 23 625 647 625 647 0.98 15 16 0.013 1.2 10.5 0.1 1 23 713 735 713 735 0.97 16 16 0.19 18 6.9 3.8 1 23 741 764 741 764 0.97
Sequence Information
- Coding Sequence
- ATGTCCAAAGAGGTCGCGGAACGAATAGACCCAACCTCCTTATTACCTGATGAACCTATGGTTTATGAGTACAAGAAGAAAAAAAAGAAGAAGAAACGCAAACATCACCATGAAGATCCATTTAAGGGCCTGGATGATGTGAACCCATTTGCGACTCAAGTGGTTATAGAGAAATGCTTAGATGATGATGATGATGATGATGATGGTCATCGCGATGCTATTTTTGATCCAGAAGTAATGGTAAAAGTTGAGGATATTGAGGTGGATTTGGATTTTACTGAGTTTGCGGACAACTCCGGTCTGGAAGATGCACCAACTGAAGAAAGCCATGAGCCAGCTGTCAATATCACCCAGCAAAAGAATCGTGACGCAGTCCTTCTGACCTTCGAGAATGTTGTCAGTAATCATCAAACTGAAAACATAAAAGCAGAGCCTGAGCCGGAAAAGAAAATGTTGACATGTGACATTTGCCATCTAGTCTTCACTACCAATAGAACATTTCACATGCACCAACGTAACAAACACAAGGCGTTTAAGAGCAACAATATCTATACATGTGAGGAATGTGGGATCTCCTATGAACAGAAAAACAGCTTAGTGGCTCATAAAAGGAGAAAGCATGGTCCAAACGCTGCCGTAGATGATTCAGAGGAGCATACGTGTGAAGTCTGTGCATTGGTATTCAAGGGTTCTAATAGACTCCGTTTGCACAAGCAGAGAAAACATGGGGAGTACCATGAGAGTTTCAGATACAAGTGCGCCCAATGTGGACTATCTTACGACAAATACTCAAGTCTTGTTACTCACACCAAAAGGAAGCACACAAACAAACGAAAGAAGAAGAAAAACACGTGGTATAGATGTCCGATGTGTCCCAAGATATACACGGCACGAGATGCCTATGTCCGGCATATACAACGGACTCACAACAAGGCAGAAGACCAGAAAATACCGCATGAATTGCTGGCGAACATATTCCAAGGGAACTTCAACCAGTCTGGAGAGATACCATGCAAGGAATGTCCGTTAGTATTTTCCAGTGTCATGTACTTAAAGATGCATATGAGACGTAAGCATAATGCATACCGGGACGAGTTCAGGCTCAAGTGCAATATCTGTAACTTATCGTATAACAAGATTGAGAGTTTGAAGCGTCATGTTAATAGAAAACACATGACTCCAGGGCCATTTTGTGACATTTGCAATAAGACATTTGATAGCATGAAATCATATGTGAACCATTCACATGAAAAACCAATAGCTGAGTGTCAATTCTGTGGCCTGATATTCGCTTCCCCTGGAGGCCTACAAAAGCATCTACGCTGTACTCATAAATTGGATATGGGACCTAAAACAGTATTCTGTACAGTTTGCAATGAAGGTTTTCACGAAAACAGGCAATTAAAAGAACATGTAAGAAAAGTACACTTGCAGATAACCTACCCATGCCTTATTTGCCAGAAAAACTTTAAAACTAAGGAGAGTTATCGAAGACACATGTTTAGGTTCCACCCGACTAATTTTCCTTCAAAGAAGCCAGACCATTTGTGTGCAATGTGCTCAGATGCTTTCACAAACGAATTTGAACTCAGCCGTCATATCAATTTGGTTCATAACAAAATGGATAACATTAAAAAGGAGTCTGATGGTATAAAAAAAGAGATTGAAGACGAGAAGCCAAATGAAGATCAGAAACAAACGTTCCAGTGTACTAAATGTCCTGAGGTCTGTCATACGTGGGAAGAGATACGTAAGCATTATGAACAATTCCACCACATTACTGAAGAAACACAGTGCCAAGCTTGCGGTCAGTTCATGCCAGACGCAGAGCTGGCCAAGCATATGAAACTAGTCCATCCTGTGGTAGTCGACTTCAAGTGTTCATATTGTGAGTACGTAACGACCTCAAAGGTAAGCTTAACGCAACACATTCTGAGACATAAGAATGCTTCAACGTTTGACTGTGATTATCCGAGCTGTCGATACAAAAGTTACTATAAAGAAGCTATGGATAAACATAAAAAGAAGCATCAAGAACAGGGTGTCAAATTGCAGTGCGCTCATTGTCCGTTCCAGAGCATGAATAAATACATTTTGAGATATCATGAAGAGGAACATGCCACGGGCAAGAAGAAATATGTCTGTGATCAATGTGATTATGCCACTATTTTACCCGCTAACTTAGTTCAACATAAATACAAGCACTCAACAGTCAAAAGGTTTAAATGTGAATACTGTCAGTTCGCAACTAAGTACAATACGTCCCTAAGATTTCATGTGAGAAAAAAGCATTGTGATTTGCCATTCTTGGCTAATGCTAGCTCTACCGTAGATAATAGTGTTAGGAATAAAGTTTAA
- Protein Sequence
- MSKEVAERIDPTSLLPDEPMVYEYKKKKKKKKRKHHHEDPFKGLDDVNPFATQVVIEKCLDDDDDDDDGHRDAIFDPEVMVKVEDIEVDLDFTEFADNSGLEDAPTEESHEPAVNITQQKNRDAVLLTFENVVSNHQTENIKAEPEPEKKMLTCDICHLVFTTNRTFHMHQRNKHKAFKSNNIYTCEECGISYEQKNSLVAHKRRKHGPNAAVDDSEEHTCEVCALVFKGSNRLRLHKQRKHGEYHESFRYKCAQCGLSYDKYSSLVTHTKRKHTNKRKKKKNTWYRCPMCPKIYTARDAYVRHIQRTHNKAEDQKIPHELLANIFQGNFNQSGEIPCKECPLVFSSVMYLKMHMRRKHNAYRDEFRLKCNICNLSYNKIESLKRHVNRKHMTPGPFCDICNKTFDSMKSYVNHSHEKPIAECQFCGLIFASPGGLQKHLRCTHKLDMGPKTVFCTVCNEGFHENRQLKEHVRKVHLQITYPCLICQKNFKTKESYRRHMFRFHPTNFPSKKPDHLCAMCSDAFTNEFELSRHINLVHNKMDNIKKESDGIKKEIEDEKPNEDQKQTFQCTKCPEVCHTWEEIRKHYEQFHHITEETQCQACGQFMPDAELAKHMKLVHPVVVDFKCSYCEYVTTSKVSLTQHILRHKNASTFDCDYPSCRYKSYYKEAMDKHKKKHQEQGVKLQCAHCPFQSMNKYILRYHEEEHATGKKKYVCDQCDYATILPANLVQHKYKHSTVKRFKCEYCQFATKYNTSLRFHVRKKHCDLPFLANASSTVDNSVRNKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01545091;
- 90% Identity
- iTF_01545091; iTF_01543182; iTF_01546863; iTF_01544181;
- 80% Identity
- -