Ycag005518.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Yponomeuta cagnagella
Gene Symbol
-
Assembly
GCA_947310995.1
Location
OX371293.1:10212766-10215721[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0004 0.029 15.4 2.2 2 23 156 178 155 178 0.96
2 16 1.2e-05 0.00089 20.1 0.5 1 23 187 210 187 210 0.98
3 16 0.078 5.5 8.2 2.1 1 23 222 245 222 245 0.96
4 16 0.0016 0.11 13.5 1.3 1 23 254 277 254 277 0.97
5 16 0.00031 0.022 15.7 0.2 1 23 289 312 289 312 0.97
6 16 7.9e-05 0.0056 17.6 0.3 2 23 340 362 339 362 0.96
7 16 0.00058 0.042 14.9 1.1 2 23 372 394 371 394 0.96
8 16 0.1 7.4 7.8 0.9 3 19 401 417 400 419 0.93
9 16 0.0004 0.029 15.4 0.2 2 21 425 444 424 447 0.94
10 16 0.0038 0.27 12.3 1.8 3 23 458 479 457 479 0.97
11 16 3.3e-05 0.0023 18.8 3.3 1 23 484 507 484 507 0.96
12 16 0.019 1.3 10.1 0.6 3 23 520 541 518 541 0.93
13 16 0.099 7.1 7.8 5.5 1 23 571 594 571 595 0.94
14 16 0.00011 0.0081 17.1 0.8 2 23 629 650 628 650 0.97
15 16 0.014 1 10.5 0.1 1 23 716 738 716 738 0.97
16 16 0.07 5 8.3 2.8 1 23 744 767 744 767 0.97

Sequence Information

Coding Sequence
ATGTCCAAAGAGGTCACAGAACGAATAGATCCAACCTCCTTACTACCTGATGAACCGATGGTTTATCAATACAAGAAGAAAAAAAAGAAGAAGAAACGCAAACATCACCATGAAGATCCATTTAAGGGCCTGAATGATGTAAACCCATTTGCAACTCAAGTGATTATAGAGAAATGTTTGGATGATGATGATGATGATGATGATGGTGGTGATGGGAATCATGATGCCATTTTTGACCCCGAAGTAATGGTGAAAGTTGAGGATATTGAGGTGGATTTGGATTTTAATGAGTTTGTGGACAACTCTGGTCTGGAAAATGCAGCATGTGAGGAAAGCCAAGAGCCAGCTGTCAATATCAGCCAGCAAAAGAATCACGACGCAGTCCTCTTAACCTTCGAGAATGTTGTTGGTAATCATCAACCCGAAAACTTAAAAACTGAGCCTGAGCCTGAAAAGAAAATGTTGACATGTGACATTTGTCATCTAGTCTTCACTACCAATAGAACATTAGACATGCACCAACGTAACAAACACAAGGCGTTTAAGAGCAATAATATCTATACTTGTGAAGATTGTGGGGTCTCGTATGAACAGAAAAACAGCTTAGTGGCTCATAGAAGGAGAAAGCATGGTCCAAATGCAGCCGTAGAAGATTCGGAGGAGCATACATGTGACATCTGTGCATTGGTATTCAAGGGTTCTAATCGACTCCGTATGCACAAGCAGAGAAAGCATGGAGAGTACCATGAGAGTTTCAGATACGAGTGTATGCAATGTGGACTATCGTACGACAAATACTCAAGTCTTGTTACTCACACCAAAAGAAAGCACACGCATAAACGAAAGAAGAAAAAAAACACTTGGTATAACTGTCCAATGTGTCCTAAGATATACACGGCACGAGATGCCTATGTCCGGCATATACAACGGACTCACAACAAGGAAGAAGACCAGAAAATACCTCATGAATTGCTGGCGAATATCTCCCAAGGGAACTTCAACCAGTCTGGGGAAATACCATGCAAGGAATGTCCGTTAGTATTTTCCAGTGTTATGTACTTAAAGATGCATATGAGACGTAAGCATAATGCATACCGGGATGAATTCAGGCTCAAGTGCAATATCTGTAACTTATCGTATAATAAGATTGAGAGTTTGAAGCGTCATGTTAATAGAAAACACATGGCTCCAGGACCATTTTGTGATGTTTGCAATAAGACATTTGATAGTATGAAAGCATATATGAACCATTCACATGAAAAGCCAATAGTTGAGTGTCAAATCTGTGGCTTGATATTTGCTTCGCCTGGAGGCCTACAAAAACATCTACGCTGTACTCATAAATTGGACATGGGACCTAAAACAGTATTCTGTACAGTTTGTAATGCAGGTTTTCACGAAAACAGGCAATTAAAAGAGCATATGAGAAAAGTACACTTACAGATAACCTACCCATGCCTTATTTGCCAGAAAAACTTTAAAACAAAGGAGAGCTATCGAAGACACATGTTTAGGTTCCACCCGACTAACTTTCCTTCAAAGAAGCTGGACCATTTGTGTGCAATGTGCTCAAGCGCTTTCACAAACGAGTTTGAACTCAGTCGCCATATCAATCTGGTTCATAACAAAATGGAAAACATCAAAAAAGAGTCTGATGGTATCAAAAAAGAGGTTGAAGATGAGAAGCCGAACGAAGATCAGAAACAAATGTTTCAGTGTACAAAATGTCCTGAGGTTTGTCATACGTGGGAAGAGATACGTAAGCATTATGAACAATTCCACCACAGAACTGAAGAAACACAGTGTCAAGCTTGCGGTCAGATCATGCCAGACTCAGAGCTGGCGAAGCATATGAAACTAGTCCATCCTGTGGTAGTCGACTTGAAGTGTTCATATTGTGACTACGAAACAACCTCAAAAGTCAGCTTAACGCAACACATATTGAGACATAAGAATGCTTCAACATTTAACTGTGATTATCCGAACTGTCGATATAAAAGTTACTATAAAGACGCTATCGACAAACACAAAAAGAAGCATCAAGAACAGGGTGTCAAGTTGCAGTGCGCTCATTGTCCATTCCAAAGCATGAACAAATACATCTTGAGATATCATGAAGAGGAACACGCAACGGGCAAGAAGAAATACGTCTGCGATCAATGTGATTATGCCACTATCTTACCAGCTAACTTAGTTCAACATAAGTACAAGCACTCAACAGTCAAAAGGTTTAAATGTGAATACTGTCCGTTCGCAACAAAGTATAATACATCTCTAAGATTTCACGTGAGGAAAAAGCATTGTGATTTACCATTCTTGGCTAATGCTAGCTCCACCGTAGATAATATTAGTAATAAAGTTTAA
Protein Sequence
MSKEVTERIDPTSLLPDEPMVYQYKKKKKKKKRKHHHEDPFKGLNDVNPFATQVIIEKCLDDDDDDDDGGDGNHDAIFDPEVMVKVEDIEVDLDFNEFVDNSGLENAACEESQEPAVNISQQKNHDAVLLTFENVVGNHQPENLKTEPEPEKKMLTCDICHLVFTTNRTLDMHQRNKHKAFKSNNIYTCEDCGVSYEQKNSLVAHRRRKHGPNAAVEDSEEHTCDICALVFKGSNRLRMHKQRKHGEYHESFRYECMQCGLSYDKYSSLVTHTKRKHTHKRKKKKNTWYNCPMCPKIYTARDAYVRHIQRTHNKEEDQKIPHELLANISQGNFNQSGEIPCKECPLVFSSVMYLKMHMRRKHNAYRDEFRLKCNICNLSYNKIESLKRHVNRKHMAPGPFCDVCNKTFDSMKAYMNHSHEKPIVECQICGLIFASPGGLQKHLRCTHKLDMGPKTVFCTVCNAGFHENRQLKEHMRKVHLQITYPCLICQKNFKTKESYRRHMFRFHPTNFPSKKLDHLCAMCSSAFTNEFELSRHINLVHNKMENIKKESDGIKKEVEDEKPNEDQKQMFQCTKCPEVCHTWEEIRKHYEQFHHRTEETQCQACGQIMPDSELAKHMKLVHPVVVDLKCSYCDYETTSKVSLTQHILRHKNASTFNCDYPNCRYKSYYKDAIDKHKKKHQEQGVKLQCAHCPFQSMNKYILRYHEEEHATGKKKYVCDQCDYATILPANLVQHKYKHSTVKRFKCEYCPFATKYNTSLRFHVRKKHCDLPFLANASSTVDNISNKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01545091;
90% Identity
iTF_01545968;
80% Identity
-