Ypad019044.1
Basic Information
- Insect
- Yponomeuta padella
- Gene Symbol
- -
- Assembly
- GCA_947311075.1
- Location
- OX371235.1:17624448-17647711[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.002 0.13 13.2 0.5 2 23 200 222 200 222 0.96 2 28 0.0012 0.078 13.9 0.7 2 21 251 270 250 271 0.92 3 28 0.0002 0.014 16.3 2.6 3 23 299 320 297 320 0.96 4 28 0.00033 0.022 15.7 1.0 1 23 373 396 373 396 0.97 5 28 0.085 5.7 8.1 0.1 1 23 413 435 413 435 0.96 6 28 0.00021 0.014 16.3 1.4 3 23 474 494 472 494 0.96 7 28 0.00076 0.051 14.5 5.7 2 23 654 676 654 676 0.97 8 28 0.82 55 5.0 0.1 1 23 726 749 726 749 0.96 9 28 0.017 1.1 10.3 0.9 1 23 798 820 798 820 0.96 10 28 0.0049 0.33 12.0 6.3 2 23 832 853 831 853 0.96 11 28 0.077 5.2 8.2 1.8 2 23 865 886 864 886 0.96 12 28 0.026 1.7 9.7 0.8 1 23 896 918 896 918 0.96 13 28 0.0034 0.23 12.5 2.6 2 23 944 965 944 965 0.95 14 28 0.0069 0.46 11.5 3.5 1 23 976 998 976 998 0.98 15 28 8.4e-06 0.00056 20.7 0.9 1 23 1006 1028 1006 1028 0.98 16 28 0.0028 0.19 12.8 0.1 2 23 1048 1070 1047 1070 0.97 17 28 0.81 54 5.0 1.0 1 17 1088 1104 1088 1110 0.81 18 28 6.3 4.2e+02 2.2 2.5 1 16 1117 1132 1117 1139 0.69 19 28 0.0042 0.28 12.2 1.5 2 23 1150 1172 1149 1172 0.95 20 28 0.019 1.3 10.1 0.1 2 23 1195 1216 1194 1216 0.95 21 28 0.0011 0.071 14.1 0.3 3 23 1298 1318 1296 1318 0.95 22 28 0.042 2.8 9.0 3.8 3 23 1326 1346 1324 1346 0.94 23 28 0.0064 0.43 11.6 1.0 2 23 1357 1379 1356 1379 0.95 24 28 0.11 7.4 7.7 3.2 2 23 1396 1414 1396 1414 0.95 25 28 0.98 65 4.7 1.4 2 20 1418 1436 1418 1438 0.92 26 28 0.36 24 6.1 1.6 2 23 1485 1506 1484 1506 0.93 27 28 0.0026 0.17 12.8 0.4 2 23 1517 1539 1516 1539 0.95 28 28 0.38 25 6.0 2.4 2 20 1577 1595 1576 1597 0.93
Sequence Information
- Coding Sequence
- ATGGCCCTCAAACTTGGAAAATGCCGACTCTGCCTCAAGCTTGGGGACTTTTACTCCATCTTCACCGTGGATAACTCGATGCAACTGGCCGAGATGGCTATGGAATGCGCCAGAATAAAAATATATGATGGGGATGGACTACCAGACAAGGTGTGCTCAGAATGCATCCAGAAGCTCAGCAGTGCTCACATCTTTAAGCAGCAGTGTGAGCGCGCAGACCAGGAACTGCGCAGGAACTATGTGCCTCCGCCAGGCTTCAGCGTCACCCCCTCCCCAAACCGTCAGAGCAGCGACTCCGCTTTCTCCAACCACACGGACCTTTCGGCTAAACCCTCGTCCTCCACCGAGCGGAAGTCCACACCCGCCAGCCGCGCCCGCAAGCGCAGTCTCGAGAGCGACGCCTCCGCTCGCTCCAGGGACAACTCCTTCCGTGGTAGCGCCTCCAAACCCAGGGAAGAGAAGCGATCCCGCGTAGAGTCAGAAAACACCTCAGCCCGCGAATCGGACTATGAAAACGACGACAGCACAGCCAACTACTCCGAGGAGGGAGACGAGGGAGACAGCGATTCCAATGAACCTTTACTAAAAAACGACAGGACGTGTCAGCAATGTGGCAGAGTGTTCCCGAGCAAAAAAGGCATGCTCATCCACACCAAAAGAGCTCACTCGAATCTCCGCGAGAACGAAGTCGTCAGCATTCCAGTGGACAACACCAAGACAGAGGAAAAGGAAAAGGACGAAGAGGGGCAGTCCTGCGACAAATGCGGTAGAACATTCAAGCTCAAGATCATGCTGAAGAGGCATTACGACACGTGCAACGTCAAATCCGACACGTCGCCCAAGAAGGAACTGCTGGTCACGCTGGAACCGCTCAATCCGGAGAAGAAGATCGATTGCCAAATGTGCTCGACCAAGTTCAAAAACATCGAGAACTTGGAGAAACACATGAGAATGTGCCATGCAGCCGTTCTCAATAAGCGGACCAGCGGTGAGAAGCCGCCGGAGCAGAACAAGAAAGTCCCCGTACCGTGCATATTCTGCAACAAACACTTCGACGACTACTACGTCCACGCAGTGCACTTCAACAGCTGCAACAAGGCGGTGAATCTCACCACCTTCGAGTGTAAAGTGTGCAAGAAGGTGTTCGGTCGAAAGAACGCTTATTTCCTCCACATAAAGAACATCCACTTCGAGCCGCGGCATGGGCAGGCAGCGAAGCCGGGCGCCGGCGGGAGCTTCGAGTGCCGCATGTGCAGTAAGAAGATGGCGACGCAGGAGGCGCTCATAACGCACCTGGCAGCGCACGTGTCCCATATTGACGAGCCGGGGTCGGTGGATGAAGAATCTAGAGCCAGCACAATTGACGATTCCACCTCCCAGCACTCTGAGCAGAGCGCGTCTGCCTCTGGCCCGCTGGCGTGCAAGTTCTGCGACAAACGGTTCTCCTACAAGAAGGCCCTGGAAAGCCACGAGAACAAACACATTCAGGAAGGCGCTGAAATTAAAACCGAACCGCCCGATCCGGAGAAAAATCCCAATATATCCAGCACTAACCTCTCCAAATACAGGCCTGAGAAGGCCAGACAGCGACGGGAGCCTGTCCAGCCTCAACAGGTGCCGGCCGGGCCGCTGCGAGGAGTAGTCTGGCAGAAGCCAGCCGGGCCGTGCCAGAGGGCTGCGACTGGGTTTTGGGGCGTCCCCGCCTACTCACAGTCACCCATTCTCCATCCTGTGCAGGCGGTAGCACAGTGTCAGTCTGCTGTCCTCCCACGGATTGCTCTGGTCGCCTTCCCTTTGCTCCAGGTGGTCCCTGCAACCTCGAGGTGGAGGTCGCAGCGGGAGCGCTTCTCCCAGGAGTCGGCTGAGATGCCGGAGCCGCACTTCGCTGTCCCAGTGGCGGGCGCACAGGACACGGACTCCGAAGATTCGAGCGGCGAAGAGGACGGCGAAGGAGACAACACCTGCCACATCTGCGAGAAAATGTTCTCGTACAAACGAGCCCTGGTCCACCACAAGCGGACTAAGCACAACATGAGCTCCGGGACCAAGAGGGCGCCCGTCCTGGCCAAGAACTGCAAGGTCCAGTGCCTCATTTGTGACCTGGAGATGACAGTCAGCTCGTACAAGGAGCATAATAAGAAGCACATCGCGGAGAACATCAAGCCGCGCAATCTGTACACCTGTTCGGCGTGTGGCGAGACGTCCATGAGCCTGCAAGGGTTGGGCACTCACATCAAGCTGGTGCATAGGCTCAAGCAGCAGTCGCCGAAGCGGATGCTGATGCCGAACCCGGCGGATTTTTGTGAGGTCGTTGTGACGAAGTCGGAACCCCTGGAAGCGATCCAGAGTCACAACGGCGTTGATGAGGTTCCGGCGGAGAGTCCCGGCGGGTTCGCCTGCCCGCACTGCAACAAGATGATGGGCACGCTTCTGTCGCTGAAGCGGCATCTCAACTGGCATACCAACGTCGGCGACGGACTGGAGCAACAGATCGAGTGCTTCGTCTGCCAAGAGAAATTCCGGTTCAAGGGCCACTTCCGGCGTCATATGAAGCATCACTACAGTGACACCACGCTCGACCCCAAGTTTCTGACCTGCACCATATGCAACCGCCGCAGCAAGCATCTGCGGGCCGCCCAGGCTCACATGAACTTCCACAAGCAGACACGGTTCAAGGCTAACGACTACGAGTGCTCCATCTGCAAAAGAGTCTTCCAGTTCCGAAAGGTATACCTCTCGCACATGGGGATACACTACAAAAGAGGCGAGACCATAAAGAACACGGTCGTCGGCGACGCTGCCAAAAAGGATGGCCAGAACTTGGACAATACTTGTCCGCTGTGCAATAAGGTTTGTGATAACGAGGTCTCTCTCAAACATCACATGGCCTTCCACAAGTCAAAGTCCTCCTTATTCGGCGATCGCCACCAGTGCCCCTTCTGCGAACTACAGTTCACAAACAAAAGGAGCAAGGAGCTGCACTTACGCACACACTTCGAGGATGATAACGGTCCGTACAAGTGTAACATCTGCGGCAAAGGCTACACGGACGAGGAGTACTTCCGGAAACATCTCAAGGGACACAACTTTGACCACACAAATCATCAGAAGCGCCTGGCGAAACTGCGCGAGAACAAAGTGAAATGCCCGATTTGCACCAAGTACTATCCCAATTTGGCAAAACTCATCGGGCACCTGCGACGGACTCACCCCGAAAGTAAGATGATCAAGGTGGACCCCGACGCGCCACCAGAGAAGATCTACCCCTGCAAACTCTGCGCCAAAGTGTTTAGAAACGAGAAGAGGTTTAAATTCCACGAGGAAGCTCACCTGAGGCGACCGGAATTCTTCAAGTGCAAGTTCTGCGGTAAGAAAACTTTGTCGCTTAAAAACCACAACATTCACGTCAAAGGACATTTGACGAGGAAACACGTCGACAACCCACTGAAGTGTCCTCAGTGCGACGAGCACTTCATCCGCGGCTACGACTTGCACTACCATCTGAGGGACGTCCACAACGTCGTCGAGACCTGGATCGCGGACAGGACCCAGCAGACCCTCAACGGACCGTTGAAACATCTGCAATGCTCCATCTGCATGAAAGTCCTGGCCAGCCAAGGAAACTACGAGCGCCACATCGATTACCACAACACGTTGCGCTGCAACTACTGCTTCGATTTCTTCAGCGCTCTCCGATTCTTAGAAGGCCATCTAGCCTTCAGTTGCGAAAAGAAGAAGCTAATCGGGGAAACCGAGGTCTATCCCAGGAAGATCAAATGCCACGTGTGCTACAAAGCTTTCCATTTACAAGTGAAGCTCGACTGCCATTTGAGGACTCAGCACGACATCAACACATCCAAAGAAGCGGGCGAAGGGAAGAAAGAAATTATCTGCGATTACTGCTTTAAAGTGTTCGAGAACGAATACGCCCTGCAAACGCACAAGTTGTACCATAGAACCATTGGTTACTACGGTTGCCTTTACTGCGAGAAGAAGTTCAACACTCTGGTCAACTACAGGAAGCATAAGACCCACCATACTTCCCAACTTAACGTCGATAACCCGACGAAGTGCGAACATTGCGACGAAACGTTCGTCCCCTTCAGAGAGTTCATTTACCACATGAAGGAGGTCCACGGCGACGATAAGGAGTGGATCGTGTACCCCAAAGAGTCCATAGAAGAGGAGTGTCCAATATGCAAGAAAGTGTTCTTCAACCTGCACAAACATCTGCGGTATCACGAGGAGAACCGGTGCAAGAAGTGCGGCGAGTACTTCTATTCCACTATCGACTTTGACAACCATCTATGCGACATTGACAGCGAGGGTGAAGCGGAGACCTTCGCAGTAGAACAGCCAAAGTACGAGGAATGCCGGTTCTGCTTCAAGCCATTGACAAATTCGAACTCCAAGCTGAAGCACGACTTGATCCACAAAGGCTCCGGGTCGATCTCTTGCAGATTCTGCAAGCTGAAGTTCAAGACTCTAGACGCGTTCAACATCCACTCGTTCTCGCACCGCAGCAGGAAATACAAGAAGAAGCCGATAAAATGCCGGCAGTGCGGAGAGAAGTTCATCCAGTACGGGCCCTTCATGAAACACATGAAGCTTGTGCACAAGTCTAAGAACAAGCTGCACTACAGGGCCATCGTCAAGCCGGAGACATGTGTGGTGTGCGGGGACGATTTCCCCAACTTGCACAACCATTACCGAGCTCACTTGCTGAACCAATGCCAGAGCTGCGGCAAGTATTTCACCTCGGCAAAAGTCTTCACCCAACACAAGTGCGATAAAGAAGACAGTGACCCGACTAAAGTTTTCACCTCCGATGCAAACCTTATGGCTTTGATCAACTCCTACGTTCCCAAAGACGAGCGGGACAATGAGAAGTACTACGGAATGTCTGATGATGAGGAGGAGGAAGAGGAAAAAGATGAGGAAGAAATCACATCGACAGTTGTGGACTCGAAAGTGGAACCTGGGACGTTTGTGAACCGGGACGACAGTCAAATCTCCACTGAGATGGAACCTTTGATGCCTCTGTCCATTCAGTCGCCGATAATTTCTGAGGTCCTGTCGTTGTATCAGGATAACGACTGCGAGATCATTGATATAGGAGACGACGATAATCCGTATGACAGTGGAAAAGTTATAGATTTGGTGGACGATGACTCACGAGATTGA
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTVDNSMQLAEMAMECARIKIYDGDGLPDKVCSECIQKLSSAHIFKQQCERADQELRRNYVPPPGFSVTPSPNRQSSDSAFSNHTDLSAKPSSSTERKSTPASRARKRSLESDASARSRDNSFRGSASKPREEKRSRVESENTSARESDYENDDSTANYSEEGDEGDSDSNEPLLKNDRTCQQCGRVFPSKKGMLIHTKRAHSNLRENEVVSIPVDNTKTEEKEKDEEGQSCDKCGRTFKLKIMLKRHYDTCNVKSDTSPKKELLVTLEPLNPEKKIDCQMCSTKFKNIENLEKHMRMCHAAVLNKRTSGEKPPEQNKKVPVPCIFCNKHFDDYYVHAVHFNSCNKAVNLTTFECKVCKKVFGRKNAYFLHIKNIHFEPRHGQAAKPGAGGSFECRMCSKKMATQEALITHLAAHVSHIDEPGSVDEESRASTIDDSTSQHSEQSASASGPLACKFCDKRFSYKKALESHENKHIQEGAEIKTEPPDPEKNPNISSTNLSKYRPEKARQRREPVQPQQVPAGPLRGVVWQKPAGPCQRAATGFWGVPAYSQSPILHPVQAVAQCQSAVLPRIALVAFPLLQVVPATSRWRSQRERFSQESAEMPEPHFAVPVAGAQDTDSEDSSGEEDGEGDNTCHICEKMFSYKRALVHHKRTKHNMSSGTKRAPVLAKNCKVQCLICDLEMTVSSYKEHNKKHIAENIKPRNLYTCSACGETSMSLQGLGTHIKLVHRLKQQSPKRMLMPNPADFCEVVVTKSEPLEAIQSHNGVDEVPAESPGGFACPHCNKMMGTLLSLKRHLNWHTNVGDGLEQQIECFVCQEKFRFKGHFRRHMKHHYSDTTLDPKFLTCTICNRRSKHLRAAQAHMNFHKQTRFKANDYECSICKRVFQFRKVYLSHMGIHYKRGETIKNTVVGDAAKKDGQNLDNTCPLCNKVCDNEVSLKHHMAFHKSKSSLFGDRHQCPFCELQFTNKRSKELHLRTHFEDDNGPYKCNICGKGYTDEEYFRKHLKGHNFDHTNHQKRLAKLRENKVKCPICTKYYPNLAKLIGHLRRTHPESKMIKVDPDAPPEKIYPCKLCAKVFRNEKRFKFHEEAHLRRPEFFKCKFCGKKTLSLKNHNIHVKGHLTRKHVDNPLKCPQCDEHFIRGYDLHYHLRDVHNVVETWIADRTQQTLNGPLKHLQCSICMKVLASQGNYERHIDYHNTLRCNYCFDFFSALRFLEGHLAFSCEKKKLIGETEVYPRKIKCHVCYKAFHLQVKLDCHLRTQHDINTSKEAGEGKKEIICDYCFKVFENEYALQTHKLYHRTIGYYGCLYCEKKFNTLVNYRKHKTHHTSQLNVDNPTKCEHCDETFVPFREFIYHMKEVHGDDKEWIVYPKESIEEECPICKKVFFNLHKHLRYHEENRCKKCGEYFYSTIDFDNHLCDIDSEGEAETFAVEQPKYEECRFCFKPLTNSNSKLKHDLIHKGSGSISCRFCKLKFKTLDAFNIHSFSHRSRKYKKKPIKCRQCGEKFIQYGPFMKHMKLVHKSKNKLHYRAIVKPETCVVCGDDFPNLHNHYRAHLLNQCQSCGKYFTSAKVFTQHKCDKEDSDPTKVFTSDANLMALINSYVPKDERDNEKYYGMSDDEEEEEEKDEEEITSTVVDSKVEPGTFVNRDDSQISTEMEPLMPLSIQSPIISEVLSLYQDNDCEIIDIGDDDNPYDSGKVIDLVDDDSRD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01543169; iTF_01546853; iTF_01544171; iTF_01545963;
- 90% Identity
- iTF_01543169; iTF_01546853; iTF_01544171;
- 80% Identity
- -