Yplu030999.1
Basic Information
- Insect
- Yponomeuta plumbellus
- Gene Symbol
- -
- Assembly
- GCA_947310845.1
- Location
- OX371198.1:20120525-20143684[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.098 9.1 7.8 0.2 2 23 196 218 196 218 0.96 2 28 0.001 0.094 14.0 0.7 2 21 247 266 246 267 0.92 3 28 0.0082 0.76 11.2 1.6 3 20 295 312 293 316 0.93 4 28 4.5e-05 0.0042 18.3 1.5 1 23 374 397 374 397 0.97 5 28 0.075 6.9 8.2 0.1 1 23 414 436 414 436 0.96 6 28 9.6e-05 0.0089 17.3 0.7 3 23 475 495 473 495 0.95 7 28 0.00014 0.013 16.8 4.8 2 23 542 564 542 564 0.97 8 28 0.71 66 5.1 0.1 1 23 614 637 614 637 0.96 9 28 0.015 1.4 10.4 0.9 1 23 686 708 686 708 0.96 10 28 0.0043 0.4 12.1 6.3 2 23 720 741 719 741 0.96 11 28 0.067 6.2 8.3 1.8 2 23 753 774 752 774 0.96 12 28 0.023 2.1 9.8 0.8 1 23 784 806 784 806 0.96 13 28 0.0052 0.49 11.8 3.2 2 23 832 853 832 853 0.95 14 28 0.006 0.56 11.6 3.5 1 23 864 886 864 886 0.98 15 28 9.5e-06 0.00088 20.4 1.1 1 23 894 916 894 916 0.98 16 28 0.0024 0.22 12.9 0.1 2 23 936 958 935 958 0.97 17 28 0.31 28 6.2 1.2 1 19 976 994 976 998 0.84 18 28 5.5 5.1e+02 2.3 2.5 1 17 1005 1021 1005 1027 0.69 19 28 0.0037 0.34 12.3 1.5 2 23 1038 1060 1037 1060 0.95 20 28 0.016 1.5 10.2 0.1 2 23 1083 1104 1082 1104 0.95 21 28 0.00065 0.06 14.7 0.3 2 23 1185 1206 1184 1206 0.95 22 28 0.28 26 6.4 3.1 5 23 1216 1234 1213 1234 0.92 23 28 0.0011 0.11 13.9 1.5 2 23 1245 1267 1244 1267 0.95 24 28 0.097 9 7.8 3.2 2 23 1284 1302 1284 1302 0.95 25 28 0.85 79 4.8 1.4 2 20 1306 1324 1306 1326 0.92 26 28 0.31 29 6.2 1.6 2 23 1373 1394 1372 1394 0.93 27 28 0.0023 0.21 12.9 0.4 2 23 1405 1427 1404 1427 0.95 28 28 7 6.5e+02 2.0 2.8 2 21 1465 1484 1464 1485 0.93
Sequence Information
- Coding Sequence
- ATGGCCCTCAAACTTGGAAAATGCCGACTCTGCCTCAAGCTGGGGGACTTTTACTCCATCTTCACGGTGGATAACTCGATGCAACTGGCCGAGATGGCAATGGAATGCGCCAGAATAAAAATCTACGATGGGGATGGGCTACCAGACAAGGTGTGCTCGGAGTGCATCCAGAAGCTTAGCAGTGCTCACATCTTCAAGCAGCAGTGTGAGCGTGCAGACCAGGAACTGCGCAGGAACTATGTGCCTCCTCCAGGCTTCAGCGTCACCCCTTCTCCAAACCGTCAGAGCAGCGACTCCGCTTTCTCCAACCACACGGACCTCTCGGCCAAGCCCTCATCCTCCACCGAGCGAAAATCCACGCCCGCCAGCCGCGGCCGCAAGCGCAGTCTCGAGAGCGATGCCTCCGCTCGCTCCAGGGACAACTCTTACCGAGGTACCGCTTCCAAACCCAGGGAGGAGAAGCGATCCCGCGTGGAGTCAGCAAACACCTCGGCCCGCGAATCTGATTATGAAAACGACGAAAGCACCATCAACTACTCCGAGGGAGAGAGCGATTCCAACGAACCTCTACTAAAAAGTGACAGAACATGTCAGCAATGCGCCAGAGTGTTCCCAAGCAGAAAAGGCATGCTCATCCACGTCAAAAGAGCTCACTCGAATCTCCGCGAGAACGAAGTCGTCAGCATTCCAATGGAAAACACCAAAACGGAGGAGAAAGAAAAAGACGAAGAGGGACAGTCCTGCGACAAATGCGGTAGAACTTTCAAGCTCAAGATCATGCTAAAGAGGCATTACGACACGTGCAACGTCACAGCCGACACGTCGCCCAAGAAGGAACTGCTGGTCACGCTTGAGCCGCTTAATCCGGACAAGAAAATCGACTGCCAAATGTGCTCGACCAAGTTCAAAAACGTTGAGAACTTAGAGAAACACATGTGGATGTGCCACTCTGCCATTCTCAAGAAGCGGACTAGTGGCGAGTCGCCGCCACAGCTAAAGCCACCGGAGCAGAACAAGAAAGTGCCCGTGCCGTGCATATTCTGCAACAAACACTTCGACGACTACTACGTCCACGCGGTCCATTTCAACAGCTGCAGCAAAGCGGTGAATCTCACCACGTTCGAGTGTAAGGTGTGCAAGAAGGTGTTCAGTCGCAAGAACGCTTATTTCCTCCACATCAAGAACATCCACTTCGAACCGCGTCTGGGGCAGGCGGCGAAGACTAGTGGCGGCGGGAGCTTCGAGTGCCGCATGTGCAGTAAGAAGATGGCGACACAGGAGGCGCTCATAACGCACTTGGCAGCGCACGTCTCCCATATTGACGAGCCGGGGTCGGTGGATGAAGAATCTAGACCTAGCACAATCGACGACTCCACCTCCCAGCACTCTGAGCAAAGCGGGATCGCCACCGGCCCGCTGGCTTGCAAGTACTGCGACAAACGGTTCTCCTACAAGAAGGCACTAGCAAGCCACGAGATTAAACACATTCAGGAAGGCGCTGAGATAAAAACCGAACCGCCCGACCCGGAGAAAGATCCGAATATATCCAGCACTAACCTCTCCAAATACAGGGACACGGAGTCTGAACAATCCAGCGGCGAGGAGGGGGGCGAGACAGACAACACCTGCCACATCTGCGAGAAAATGTTCTCGTACAAACGAGCCCTGGTCCACCACTTGCGGACCAAACACAACATGAGCTCCGGGACCAAAAGGGCGCCCATCCTAGCCAAGAACTGCAAGGTCCAGTGCCTCATTTGTGACCTGGAAATGACGGTTAGCACCTACAAGGAGCATAATAAGAAGCACATCGCTGAGAATATCAAGCCTCGCAATCTGTACACCTGTTCGGCGTGCGGTGAGACGTCTATGAGTCTGCAAGGCTTGGGCACTCACATCAAGTTGGTGCATAGACTCAAGAAGCAGTCGCCGAAGCGGATGCTAATGCCGAACCCGGCGGATTTTTGTGAGGTCGTTGTGACGAAGTCGGAACCCCTGGAAACGATCCAGAGTCACAACGGCGTTGATGAGGTTCCGGCGGAGAATCCTTCCGGGTTCGCCTGTCCGCATTGCAACAAGATGATGGGCACGCTTCTGTCGCTGAAGCGGCATCTCAACTGGCACACCAACGTCGGCGACGGCCTCGAGCAACAGATCGAGTGCTTCGTCTGCCAGGAGAAATTCCGGTTCAAGGGGCACTTCCGGCGCCATATGAAGCACCATTACAGCGACACGACGCTCGACCCCAAGTTCCTCACGTGCACCATCTGCAACCGTCGCAGCAAGCATCTGCGGGCCGCGCAGGCACACATGAACTTCCACAAGCAGACACGGTTCAAGGCTAACGACTACGAGTGCTCCATCTGCAAAAGAGTCTTCCAGTTCCGAAAGGTATACCTCTCGCACATGGGGATACACTACAAGAGAGGCGAGACCATAAAGAACACGGTCGTCGGCGACGCTGGCAAAAAGGACGGTCAGAACTTGGACAACACCTGCCCGTTCTGCAACAAGGTTTGCGACAACGAAGTCTCTCTCAAACATCACATGGCCTTCCACAAGTCTAAATCCTCCTTATTCGGCGATCGCCACCAGTGCCCCTTCTGCGAACTACAGTTCACAAACAAAAGGAGCAAGGAGCTCCATTTGCGCACACACTTCGAGGACGACAACGGCCCGTACAAATGCAACATCTGCGGCAAAGGCTACACCGACGAGAACTACTTCCGGAGACATCTTAAAGGACACAACTTCGACCACTCAAATCACCAGAAGCGCCTCGCGAAACTGCGCGAGAACAAAGTGAAGTGCCCGATCTGCACCAAGTACTATCCCAACTTGGCGAAACTCATCGGGCACCTGCGACGGACCCACCCCGAAAGTAAGATGATCAAGGTGGACCCCGACGCGCCGCCAGAGAAGATCTACCCCTGCAAACTCTGCGCCAAAGTCTTTAGGAACGAGAAGAAGTTCAAGTTCCACGAGGAAGCCCACCTGAGGCGGCCGGAGTTCTTCAAGTGCAAGTTTTGCGGCAAGAAAACTTTGTCGCTCAAAAACCACAACATTCACGTCAAAGGGCATTTGACGAAGAAACACGTGGACAATCCGCTGAAGTGTCCGCAGTGCGACGAGCACTTCATCCGCGGCTACGACTTGCACTACCATCTGAGGGATGTCCACAACGTCGTCGAGACCTGGATCGCGGACAGGACCCAACAGACCCTCAACGGACCGCTGAAACATCTGCAGTGCTCCATCTGCATGAAAGTCCTAGCCAGCCAAGGAAACTACGAGCGCCACATCGATTACCACAACACCTTGCGATGCAACTACTGCTTTGACTTCTTCAGCGCTCTCCGCTTCTTAGATGGACATCTAGCCTTCAGTTGCGAAAAGAAGAAGCTGATTGGAGAAACAGAGGTTCACCCCAGGAAGATCAAATGCCACGTGTGCTACAAGGCTTTCCATTTGCAAGTGAAGCTCGACTGCCACCTGAGGACTCAGCACGACATCAAAACGTCCAAAGAAGCGGGCGAAGGGAAGAAGGAAATTGTCTGCGATTACTGCTTCAAAGTGTTCGAGAACGAATACGCTCTGCAAACACACAAGTTGTACCATAGGACCATCGGTTACTACGGCTGCATTTACTGCGAGAAAAAATTCAATACCCTGGTCAACTACAGGAAGCATAAGACCCACCATACTTCCCAACTTAACGTCGATAACCCGACGAAGTGCGAACATTGCGACGAAACGTTCGTGTCGTTCAGAGAGTTCATTTACCACATGAAGGAAGCCCACGGCGACGATAAGGAATGGATCGTGTACCCCAAAGAGTCCATAGAAGAGGAGTGTCCAATATGCAAGAAAGTGTTCTTCAACCTGCACAAACATCTACGGTATCACGAGGAGAACCGTTGCAAGAAGTGCGGCGAGTACTTCTATTCCACGATCGACTTCGACAACCATCTGTGCGATATCGACAGCGACGGCGAAGCAGAGACTTTCGCAGTAGAACAGCCAAAGTACGAAGAATGCCGGTTCTGCTTCAAGCCCTTGACGAATTGCAACTCCAAGCTGAAACACGACTTGATCCACAAAGGCTCCGGGTCTATCTCCTGCAGATTCTGCAAGCTGAAGTTCAAGACTCTAGACGCGTTCAACATCCACTCGTTCTCCCACCGCAGTTCAAAATACAAGAAAAAGCCGATAAAATGCCGGCAGTGCGGCGAGAAATTCATACAGTATGGACCCTTCATGAAACACATGAAGCTCGTACACAAGTCTAAGAATAAACTGCACTACAGGGCCATAGTCAAGCCGGAGAGGTGTGTGGTGTGTGGCGACGATTTCCCCAACTTGCACAACCATTACCGAGCTCATCTGCTAAACCAATGCCAGAGCTGCTTCAAGTATTTCACCTCGGCAAAGGTGTTCTCCCAACACCAGTGCGATAAAGAAGACAGCGACCCGAGTAAAGTTTTCACCTCCGATGAAAACCTTACAGCTTTAATCAACTCTTACGTTCCTAAAGACATGAGGGACAATGAGAAGTACTATGGAATGTCAGATGGTGAGGACGAGGAAGAGGAAAAAGAAGAGGAAGAACAAATTACATCGACCGTGGTCGACTCGAAAGTGGAGTCCGGAACGTTTGTGAACCAGCACGACAATCAAATCTCCACTGAGATGGAACCTTTGATGCCTCTGTCGATTCAGTCGCCCATAATCTCTGAAGTTCTGTCGTTGTATCAGGAGAAGGACTGCGAGATCATTGATATAGGGGACGACGATGGGCCGTATGACAGTGGAAAAGTTATAGATTTGGTAGACGACGATTCAGATTGA
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTVDNSMQLAEMAMECARIKIYDGDGLPDKVCSECIQKLSSAHIFKQQCERADQELRRNYVPPPGFSVTPSPNRQSSDSAFSNHTDLSAKPSSSTERKSTPASRGRKRSLESDASARSRDNSYRGTASKPREEKRSRVESANTSARESDYENDESTINYSEGESDSNEPLLKSDRTCQQCARVFPSRKGMLIHVKRAHSNLRENEVVSIPMENTKTEEKEKDEEGQSCDKCGRTFKLKIMLKRHYDTCNVTADTSPKKELLVTLEPLNPDKKIDCQMCSTKFKNVENLEKHMWMCHSAILKKRTSGESPPQLKPPEQNKKVPVPCIFCNKHFDDYYVHAVHFNSCSKAVNLTTFECKVCKKVFSRKNAYFLHIKNIHFEPRLGQAAKTSGGGSFECRMCSKKMATQEALITHLAAHVSHIDEPGSVDEESRPSTIDDSTSQHSEQSGIATGPLACKYCDKRFSYKKALASHEIKHIQEGAEIKTEPPDPEKDPNISSTNLSKYRDTESEQSSGEEGGETDNTCHICEKMFSYKRALVHHLRTKHNMSSGTKRAPILAKNCKVQCLICDLEMTVSTYKEHNKKHIAENIKPRNLYTCSACGETSMSLQGLGTHIKLVHRLKKQSPKRMLMPNPADFCEVVVTKSEPLETIQSHNGVDEVPAENPSGFACPHCNKMMGTLLSLKRHLNWHTNVGDGLEQQIECFVCQEKFRFKGHFRRHMKHHYSDTTLDPKFLTCTICNRRSKHLRAAQAHMNFHKQTRFKANDYECSICKRVFQFRKVYLSHMGIHYKRGETIKNTVVGDAGKKDGQNLDNTCPFCNKVCDNEVSLKHHMAFHKSKSSLFGDRHQCPFCELQFTNKRSKELHLRTHFEDDNGPYKCNICGKGYTDENYFRRHLKGHNFDHSNHQKRLAKLRENKVKCPICTKYYPNLAKLIGHLRRTHPESKMIKVDPDAPPEKIYPCKLCAKVFRNEKKFKFHEEAHLRRPEFFKCKFCGKKTLSLKNHNIHVKGHLTKKHVDNPLKCPQCDEHFIRGYDLHYHLRDVHNVVETWIADRTQQTLNGPLKHLQCSICMKVLASQGNYERHIDYHNTLRCNYCFDFFSALRFLDGHLAFSCEKKKLIGETEVHPRKIKCHVCYKAFHLQVKLDCHLRTQHDIKTSKEAGEGKKEIVCDYCFKVFENEYALQTHKLYHRTIGYYGCIYCEKKFNTLVNYRKHKTHHTSQLNVDNPTKCEHCDETFVSFREFIYHMKEAHGDDKEWIVYPKESIEEECPICKKVFFNLHKHLRYHEENRCKKCGEYFYSTIDFDNHLCDIDSDGEAETFAVEQPKYEECRFCFKPLTNCNSKLKHDLIHKGSGSISCRFCKLKFKTLDAFNIHSFSHRSSKYKKKPIKCRQCGEKFIQYGPFMKHMKLVHKSKNKLHYRAIVKPERCVVCGDDFPNLHNHYRAHLLNQCQSCFKYFTSAKVFSQHQCDKEDSDPSKVFTSDENLTALINSYVPKDMRDNEKYYGMSDGEDEEEEKEEEEQITSTVVDSKVESGTFVNQHDNQISTEMEPLMPLSIQSPIISEVLSLYQEKDCEIIDIGDDDGPYDSGKVIDLVDDDSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01545086;
- 90% Identity
- -
- 80% Identity
- -