Ycag009594.1
Basic Information
- Insect
- Yponomeuta cagnagella
- Gene Symbol
- -
- Assembly
- GCA_947310995.1
- Location
- OX371274.1:17850280-17870870[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.0018 0.13 13.3 0.5 2 23 200 222 200 222 0.96 2 28 0.0011 0.076 14.0 0.7 2 21 251 270 250 271 0.92 3 28 0.00018 0.013 16.4 2.6 3 23 299 320 297 320 0.96 4 28 0.0003 0.021 15.8 1.0 1 23 373 396 373 396 0.97 5 28 0.078 5.6 8.2 0.1 1 23 413 435 413 435 0.96 6 28 0.00019 0.013 16.4 1.4 3 23 474 494 472 494 0.96 7 28 0.0007 0.05 14.6 5.7 2 23 541 563 541 563 0.97 8 28 0.75 53 5.1 0.1 1 23 613 636 613 636 0.96 9 28 0.015 1.1 10.4 0.9 1 23 685 707 685 707 0.96 10 28 0.0045 0.32 12.1 6.3 2 23 719 740 718 740 0.96 11 28 0.07 5 8.3 1.8 2 23 752 773 751 773 0.96 12 28 0.024 1.7 9.8 0.8 1 23 783 805 783 805 0.96 13 28 0.0031 0.22 12.6 2.6 2 23 831 852 831 852 0.95 14 28 0.0063 0.45 11.6 3.5 1 23 863 885 863 885 0.98 15 28 7.7e-06 0.00055 20.8 0.9 1 23 893 915 893 915 0.98 16 28 0.0025 0.18 12.9 0.1 2 23 935 957 934 957 0.97 17 28 0.74 53 5.1 1.0 1 17 975 991 975 997 0.81 18 28 5.8 4.1e+02 2.3 2.5 1 17 1004 1020 1004 1026 0.69 19 28 0.0039 0.28 12.3 1.5 2 23 1037 1059 1036 1059 0.95 20 28 0.017 1.2 10.2 0.1 2 23 1082 1103 1081 1103 0.95 21 28 0.00096 0.069 14.2 0.3 3 23 1185 1205 1183 1205 0.95 22 28 0.039 2.8 9.1 3.8 3 23 1213 1233 1211 1233 0.94 23 28 0.0058 0.41 11.7 1.0 2 23 1244 1266 1243 1266 0.95 24 28 0.1 7.2 7.8 3.2 2 23 1283 1301 1283 1301 0.95 25 28 0.89 64 4.8 1.4 2 20 1305 1323 1305 1325 0.92 26 28 0.33 23 6.2 1.6 2 23 1372 1393 1371 1393 0.93 27 28 0.0024 0.17 12.9 0.4 2 23 1404 1426 1403 1426 0.95 28 28 0.34 25 6.1 2.4 2 20 1464 1482 1463 1484 0.93
Sequence Information
- Coding Sequence
- ATGGCCCTCAAACTTGGAAAATGCCGACTCTGCCTCAAGCTTGGGGACTTTTACTCCATCTTCACCGTGGATAACTCGATGCAACTGGCCGAGATGGCTATGGAATGCGCCAGAATAAAAATATATGATGGGGATGGACTACCAGACAAGGTGTGCTCAGAATGCATCCAGAAGCTCAGCAGTGCTCACATCTTTAAGCAGCAGTGTGAGCGCGCAGACCAGGAACTGCGCAGGAACTATGTGCCTCCGCCAGGCTTCAGCGTCACCCCCTCCCCAAACCGTCAGAGCAGCGACTCCGCTTTCTCCAACCACACGGACCTTTCGGCTAAACCCTCGTCCTCCACCGAGCGGAAGTCCACACCCGCCAGCCGCGCCCGCAAGCGCAGTCTCGAGAGCGACGCCTCCGCTCGCTCCAGGGACAACTCCTTCCGTGGTAGCGCCTCCAAACCCAGGGAAGAGAAGCGATCCCGCGTAGAGTCAGAAAACACCTTAGCCCGCGAATCGGACTATGAAAACGACGACAGCACAGCCAACTACTCCGAGGAGGGAGACGAGGGAGACAGCGATTCCAATGAACCTTTACTAAAAAACGACAGGACGTGTCAGCAATGTGGCAGAGTGTTCCCGAGCAAAAAAGGCATGCTCATCCACACCAAAAGAGCTCACTCGAATCTCTGCGAGAACGAAGTCGTCAGCATTCCAGTGGACAACACCAAGACAGAGGAAAAGGAAAAGGACGAAGAGGGGCAGTCCTGCGACAAATGCGGTAGAACATTCAAGCTCAAGATCATGCTGAAGAGGCATTACGACACGTGCAACGTCAAATCCGACACGTCGCCCAAGAAGGAACTGCTGGTCACGCTGGAACCGCTCAATCCGGAGAAGAAGATCGATTGCCAAATGTGCTCGACCAAGTTCAAAAACATCGAGAACTTGGAGAAACACATGAGAATGTGCCATGCAGCCGTTCTCAATAAGCGGACCAGCGGTGAGAAGCCGCCGGAGCAGAACAAGAAAGTCCCCGTACCGTGCATATTCTGCAACAAACACTTCGACGACTACTACGTCCACGCAGTGCACTTCAACAGCTGCAACAAGGCGGTGAATCTCACCACCTTCGAGTGTAAAGTGTGCAAGAAGGTGTTCGGTCGAAAGAACGCTTATTTCCTCCACATAAAGAACATCCACTTCGAGCCGCGGCATGGGCAGGCAGCGAAGCCGGGCGCCGGCGGGAGCTTCGAGTGCCGCATGTGCAGTAAGAAGATGGCGACGCAGGAGGCGCTCATAACGCACCTGGCAGCGCACGTGTCCCATATTGACGAGCCGGGGTCGGTGGATGAAGAATCTAGAGCCAGTACAATTGACGATTCCACCTCCCAGCACTCTGAGCAGAGCGCGTCTGCCTCTGGCCCGCTGGCGTGCAAGTTCTGCGACAAACGGTTCTCCTACAAGAAGGCCCTGGAAAGCCACGAGAACAAACACATTCAGGAAGGCGCTGAAATTAAAACCGAACCGCCCGATCCGGAGAAAAATCCCAATATATCCAGCACTAACCTCTCCAAATACAGGGACACGGACTCCGAAGATTCGAGCGGCGAAGAGGACGGCGAAGGAGACAACACCTGCCACATCTGCGAGAAAATGTTCTCGTACAAACGAGCCCTGGTCCACCACAAGCGGACTAAGCACAACATGAGCTCCGGGACCAAGAGGGCGCCCGTCCTGGCCAAGAACTGCAAGGTCCAGTGCCTCATTTGTGACCTGGAGATGACAGTCAGCTCGTACAAGGAGCATAATAAGAAGCACATCGCGGAGAACATCAAGCCGCGCAATCTGTACACCTGTTCGGCGTGTGGCGAGACGTCCATGAGCCTGCAAGGGTTGGGCACTCACATCAAGCTGGTGCATAGGCTCAAGCAGCAGTCGCCGAAGCGGATGCTGATGCCGAACCCGGCGGATTTTTGTGAGGTCGTTGTGACGAAGTCGGAACCCCTGGAAGCGATCCAGAGTCACAACGGCGTTGATGAGGTTCCGGCGGAGAGTCCCGGCGGGTTCGCCTGCCCGCACTGCAACAAGATGATGGGCACGCTTCTGTCGCTGAAGCGGCATCTCAACTGGCATACCAACGTCGGCGACGGACTGGAGCAACAGATCGAGTGCTTCGTCTGCCAAGAGAAATTCCGGTTCAAGGGCCACTTCCGGCGTCATATGAAGCATCACTACAGTGACACCACGCTCGACCCCAAGTTTCTGACCTGCACCATATGCAACCGCCGCAGCAAGCATCTGCGGGCCGCCCAGGCTCACATGAACTTCCACAAGCAGACACGGTTCAAGGCTAACGACTACGAGTGCTCCATCTGCAAAAGAGTCTTCCAGTTCCGAAAGGTATACCTCTCGCACATGGGGATACACTACAAAAGAGGCGAGACCATAAAGAACACGGTCGTCGGCGACGCTGCCAAAAAGGATGGCCAGAACTTGGACAATACTTGTCCGCTGTGCAATAAGGTTTGTGATAACGAGGTCTCTCTCAAACATCACATGGCCTTCCACAAGTCAAAGTCCTCCTTATTCGGCGATCGCCACCAGTGCCCCTTCTGCGAACTACAGTTCACAAACAAAAGGAGCAAGGAGCTGCACTTACGCACACACTTCGAGGACGATAACGGTCCGTACAAGTGTAACATCTGCGGCAAAGGCTACACGGACGAGGAGTACTTCCGGAAACATCTCAAGGGACACAACTTTGACCACACAAATCATCAGAAGCGCCTGGCGAAACTGCGCGAGAACAAAGTGAAATGCCCGATTTGCACCAAGTACTATCCCAATTTGGCAAAACTCATCGGGCACCTGCGACGGACGCACCCCGAAAGTAAGATGATCAAGGTGGACCCCGACGCGCCACCAGAGAAGATCTACCCCTGCAAACTCTGCGCCAAAGTGTTTAGAAACGAGAAGAGGTTTAAATTCCACGAGGAAGCTCACCTGAGGCGACCGGAATTCTTCAAGTGCAAGTTCTGCGGTAAGAAAACTTTGTCGCTTAAAAACCACAACATTCACGTCAAAGGACATTTGACGAGGAAACACGTCGACAACCCACTGAAGTGTCCTCAGTGCGACGAGCACTTCATCCGCGGCTACGACTTGCACTACCATCTGAGGGACGTCCACAACGTCGTCGAGACCTGGATCGCGGACAGGACCCAGCAGACCCTCAACGGACCGTTGAAACATCTGCAATGCTCCATCTGCATGAAAGTCCTGGCCAGCCAAGGAAACTACGAGCGCCACATCGATTACCATAACACGTTGCGCTGCAACTACTGCTTCGATTTCTTCAGCGCTCTCCGATTCTTAGAAGGCCATCTAGCCTTCAGTTGCGAAAAGAAGAAGCTAATCGGGGAAACCGAGGTCTATCCCAGGAAGATCAAATGCCACGTGTGCTACAAAGCTTTCCATTTACAAGTGAAGCTCGACTGCCATTTGAGGACTCAGCACGACATCAACACATCCAAAGAAGCGGGCGAAGGGAAGAAAGAAATTATCTGCGATTACTGCTTTAAAGTGTTCGAGAACGAATACGCCCTGCAAACGCACAAGTTGTACCATAGAACCATTGGTTACTACGGTTGCCTTTACTGCGAGAAGAAGTTCAACACTCTGGTCAACTACAGGAAGCATAAGACCCACCATACTTCCCAACTTAACGTCGATAACCCGACGAAGTGCGAACATTGCGACGAAACGTTCGTCCCCTTCAGAGAGTTCATTTACCACATGAAGGAGGTCCACGGCGACGATAAGGAGTGGATCGTGTACCCCAAAGAGTCCATAGAAGAGGAGTGTCCAATATGCAAGAAAGTGTTCTTCAACCTGCACAAACATCTGCGGTATCACGAGGAGAACCGGTGCAAGAAGTGCGGCGAGTACTTCTATTCCACTATCGACTTTGACAACCATCTATGCGACATTGACAGCGAGGGTGAAGCGGAGACCTTCGCAGTAGAACAGCCAAAGTACGAGGAATGCCGGTTCTGCTTCAAGCCATTGACAAATTCGAACTCCAAGCTGAAGCACGACTTGATCCACAAAGGCTCCGGGTCGATCTCCTGCAGATTCTGCAAGCTGAAGTTCAAGACTCTAGACGCGTTCAACATCCACTCGTTCTCGCACCGCAGCAGGAAATACAAGAAGAAGCCGATAAAATGCCGGCAGTGCGGAGAGAAGTTCATCCAGTACGGGCCCTTCATGAAACACATGAAGCTTGTGCACAAGTCTAAGAACAAGCTGCACTACAGGGCCATCGTCAAGCCGGAGACATGTGTGGTGTGCGGGGACGATTTCCCCAACTTGCACAACCATTACCGAGCTCACTTGCTGAACCAATGCCAGAGCTGCGGCAAGTACTTCACCTCGGCAAAAGTCTTCACCCAACACAAGTGCGATAAAGAAGACAGTGACCCGACTAAAGTTTTCACCTCCGATGCAAACCTTATGGCTTTGATCAACTCCTACGTTCCCAAAGACGAGCGGGACAATGAGAAGTACTACGGAATGTCTGATGATGAGGAGGAGGAAGAGGAAAAAGACGAGGAAGAAATCACATCGACAGTTGTGGACTCGAAAGTGGAACCTGGGACGTTTGTGAACCGGGACGACAGTCAAATCTCCACTGAGATGGAACCTTTGATGCCTCTGTCCATTCAGTCGCCGATAATTTCTGAGGTCCTATCGTTGTATCAGGATAACGACTGCGAGATCATTGATATAGGAGACGACGATAATCCGTATGACAGTGGAAAAGTTATAGATTTGGTGGACGATGACTCACGAGATTGA
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTVDNSMQLAEMAMECARIKIYDGDGLPDKVCSECIQKLSSAHIFKQQCERADQELRRNYVPPPGFSVTPSPNRQSSDSAFSNHTDLSAKPSSSTERKSTPASRARKRSLESDASARSRDNSFRGSASKPREEKRSRVESENTLARESDYENDDSTANYSEEGDEGDSDSNEPLLKNDRTCQQCGRVFPSKKGMLIHTKRAHSNLCENEVVSIPVDNTKTEEKEKDEEGQSCDKCGRTFKLKIMLKRHYDTCNVKSDTSPKKELLVTLEPLNPEKKIDCQMCSTKFKNIENLEKHMRMCHAAVLNKRTSGEKPPEQNKKVPVPCIFCNKHFDDYYVHAVHFNSCNKAVNLTTFECKVCKKVFGRKNAYFLHIKNIHFEPRHGQAAKPGAGGSFECRMCSKKMATQEALITHLAAHVSHIDEPGSVDEESRASTIDDSTSQHSEQSASASGPLACKFCDKRFSYKKALESHENKHIQEGAEIKTEPPDPEKNPNISSTNLSKYRDTDSEDSSGEEDGEGDNTCHICEKMFSYKRALVHHKRTKHNMSSGTKRAPVLAKNCKVQCLICDLEMTVSSYKEHNKKHIAENIKPRNLYTCSACGETSMSLQGLGTHIKLVHRLKQQSPKRMLMPNPADFCEVVVTKSEPLEAIQSHNGVDEVPAESPGGFACPHCNKMMGTLLSLKRHLNWHTNVGDGLEQQIECFVCQEKFRFKGHFRRHMKHHYSDTTLDPKFLTCTICNRRSKHLRAAQAHMNFHKQTRFKANDYECSICKRVFQFRKVYLSHMGIHYKRGETIKNTVVGDAAKKDGQNLDNTCPLCNKVCDNEVSLKHHMAFHKSKSSLFGDRHQCPFCELQFTNKRSKELHLRTHFEDDNGPYKCNICGKGYTDEEYFRKHLKGHNFDHTNHQKRLAKLRENKVKCPICTKYYPNLAKLIGHLRRTHPESKMIKVDPDAPPEKIYPCKLCAKVFRNEKRFKFHEEAHLRRPEFFKCKFCGKKTLSLKNHNIHVKGHLTRKHVDNPLKCPQCDEHFIRGYDLHYHLRDVHNVVETWIADRTQQTLNGPLKHLQCSICMKVLASQGNYERHIDYHNTLRCNYCFDFFSALRFLEGHLAFSCEKKKLIGETEVYPRKIKCHVCYKAFHLQVKLDCHLRTQHDINTSKEAGEGKKEIICDYCFKVFENEYALQTHKLYHRTIGYYGCLYCEKKFNTLVNYRKHKTHHTSQLNVDNPTKCEHCDETFVPFREFIYHMKEVHGDDKEWIVYPKESIEEECPICKKVFFNLHKHLRYHEENRCKKCGEYFYSTIDFDNHLCDIDSEGEAETFAVEQPKYEECRFCFKPLTNSNSKLKHDLIHKGSGSISCRFCKLKFKTLDAFNIHSFSHRSRKYKKKPIKCRQCGEKFIQYGPFMKHMKLVHKSKNKLHYRAIVKPETCVVCGDDFPNLHNHYRAHLLNQCQSCGKYFTSAKVFTQHKCDKEDSDPTKVFTSDANLMALINSYVPKDERDNEKYYGMSDDEEEEEEKDEEEITSTVVDSKVEPGTFVNRDDSQISTEMEPLMPLSIQSPIISEVLSLYQDNDCEIIDIGDDDNPYDSGKVIDLVDDDSRD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01545086;
- 90% Identity
- iTF_01545086;
- 80% Identity
- -