Basic Information

Insect: Xylota sylvarum
Gene Symbol: -
Assembly: GCA_905220385.1
Location: LR999957.1:140356030-140360490[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0012 0.15 13.2 0.4 1 23 150 173 150 173 0.97

2 12 0.93 1.1e+02 4.1 0.0 2 23 189 209 188 209 0.91

3 12 0.1 12 7.2 2.8 2 23 323 343 322 343 0.96

4 12 0.00037 0.045 14.8 3.0 1 23 349 372 349 372 0.98

5 12 7.2 8.7e+02 1.3 2.8 2 23 405 426 404 426 0.87

6 12 0.00016 0.019 16.0 1.9 1 23 432 454 432 454 0.95

7 12 6.2e-08 7.4e-06 26.7 1.0 3 23 466 486 464 486 0.97

8 12 5.1e-06 0.00062 20.7 1.9 1 23 493 515 493 515 0.98

9 12 1.2e-05 0.0014 19.6 0.9 2 23 521 542 520 542 0.96

10 12 4.2e-05 0.0051 17.8 1.0 1 20 548 567 548 570 0.93

11 12 0.0017 0.2 12.8 0.2 2 19 576 593 575 595 0.95

12 12 8.1e-05 0.0098 16.9 0.2 1 23 602 625 602 625 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0012	0.15	13.2	0.4	1	23	150	173	150	173	0.97
2	12	0.93	1.1e+02	4.1	0.0	2	23	189	209	188	209	0.91
3	12	0.1	12	7.2	2.8	2	23	323	343	322	343	0.96
4	12	0.00037	0.045	14.8	3.0	1	23	349	372	349	372	0.98
5	12	7.2	8.7e+02	1.3	2.8	2	23	405	426	404	426	0.87
6	12	0.00016	0.019	16.0	1.9	1	23	432	454	432	454	0.95
7	12	6.2e-08	7.4e-06	26.7	1.0	3	23	466	486	464	486	0.97
8	12	5.1e-06	0.00062	20.7	1.9	1	23	493	515	493	515	0.98
9	12	1.2e-05	0.0014	19.6	0.9	2	23	521	542	520	542	0.96
10	12	4.2e-05	0.0051	17.8	1.0	1	20	548	567	548	570	0.93
11	12	0.0017	0.2	12.8	0.2	2	19	576	593	575	595	0.95
12	12	8.1e-05	0.0098	16.9	0.2	1	23	602	625	602	625	0.98

Sequence Information

Coding Sequence: atgtttgGCTCACTGCCAATTTGTAGGGTGTGTTTGAAAACATCACTAGAATATAttgacttcgatacacccttcGAAGTTGAATCAAGTAAGGAAGTCGAAAATGATCTCACGTATCTCGACTGTTTTCTGGCATGTACGCGTCTCGAAATTGAATTGACTGAAAATTGTCCACAAAGTTTGTGTAGCGCGTGCGGCTTAGAATTAAAAATTGCTTATGAGTTTATCCAGAAGGCTGAATCTGCCGATAGAACTTTGAAAGAAATTGCAGCGAATACGAAGCTAGAGAAACTCGATGAGGATGAGGAAAACTTAAGCCTTCAGTCGGATGCCAATGTATTGTATGAGAATTTTGTTAGTGAAGAAACCATTAAACAGGATGTCTTTAATAATGCTAATAAAGAACCAGCTGAACAAATAGAAAGTCAAATCGATGAAGAGAAAAGTTTTGTGTGTACAGTATGTGGAGAACAATTCTTTTCACAGTTCGTTCTCAACTTACACGTTAATCGATCACATTCCAGCGATTATAACGAAGAGGACAAGCTATCGGTTGAAAAAGTTGAGTGTCAAATTTGTGATCTAGTCATACCGTTGGCAAAACTAAACTCTCACATGCAGCTACATGTGGATGCAAATAGTTTAGACTTTGATTCTGGTTCCAACTTTGCTGTAACGAATAACGATGAACAGCTTATAGACGTTGGCGAAGAGGCAAACTTCGAGATATTAGATATGACTGGTGATTCTTCATTGGGGATGACAAATAACACAAGCGCAGTGGAGTCACAAGAAGAAGACACTTTTGGTCCAGAAGATTATGAACAAATACCAGCTGACGAAGAGTTAGAAAGGGATCTTAGGTTAAAAAGCGAATCAAACTTCGATCCTGATAGTAAGTTCGCTGTGATAGAAAAGATACTAACAGACCAAGAAAAAATGCGTGTGACTAAGCCAAATTATAAGCGCTGCACGATCTGTAATCGTCATGTACGAACCGTGTCATTCCAGTCGCATATGAACGTTCACAACGGTATTCGTCAATTTTCATGCGATCATTGTCCTGGAAATTTCTTCTCGAAACGATCACTTCAATCACATATAAAGACTACGCACAAAGACCAGTTGAAATCTATTTGCAGAATATGTCATGAATCCGTAGACGGTTTGGACATGAAAGCACATGTTCACGAGAAGCATTTACGAACAGTTAAGTGTACACATTGTGATTATCAGGGACAAGAGCTTAAGATGAAAGAACATATGAAGCGAAGGCACGCTGAATCTCGGGACTTTCTGTGTAATATATGCTCTAAAACATTTTGTACGCTTGGTGTACTCAATGCTCACTTGAAATATCATGAACGCAAGGAGTCCAATATTAAATCAGACGCATGCGAAATATGCGGCAAAGTGTTCTCCACCAATCATTATCTCAAATCACACATGCTAACGCATCGGGACGAGCGTGAATTATTCGAATGCAATAATTGCGATAAGACCTATCATTCGAAGGCTGCACTGGACAATCACATGCGAATGCACAAAGGTGAcacaatcaagtgtcttttgtGTTCCAAGCAATTCGCACGACAATATGAGCTAAATGTTCACATGCgttttcacaccaaagactatcCGTTTGAGTGTGAACTTTGTGGTAAAAAATTCGCAATTAAAGGTCATTTAAGGACACACATGTGGCGTCATCAAGGTCTCAAATTGCAATGTGAAGAATGTGGCAAACTCTTTACATCCACTAAAGCGCTGCAAGAACACTCCTTTTGTCATTCTGAGATGCCTTTCCCTTGTCCTTATTGTGCAAAAGCTTACCCTTCGAAACCAAAATTCAAAGTCCATTTGAAAACTGCTCACATGGTGGAATTTTCGAATGATGAATTGCAGAAAATGAGCAAATTCCCTTTGCCTAAACGATCTAGATCGAAGAAGTTCACTTTAGTTCAGGCTGACACCGTTATGAAAGAAATTGAAGTTCACaccaaagaagaggaggaagacAATGTATAA
Protein Sequence: MFGSLPICRVCLKTSLEYIDFDTPFEVESSKEVENDLTYLDCFLACTRLEIELTENCPQSLCSACGLELKIAYEFIQKAESADRTLKEIAANTKLEKLDEDEENLSLQSDANVLYENFVSEETIKQDVFNNANKEPAEQIESQIDEEKSFVCTVCGEQFFSQFVLNLHVNRSHSSDYNEEDKLSVEKVECQICDLVIPLAKLNSHMQLHVDANSLDFDSGSNFAVTNNDEQLIDVGEEANFEILDMTGDSSLGMTNNTSAVESQEEDTFGPEDYEQIPADEELERDLRLKSESNFDPDSKFAVIEKILTDQEKMRVTKPNYKRCTICNRHVRTVSFQSHMNVHNGIRQFSCDHCPGNFFSKRSLQSHIKTTHKDQLKSICRICHESVDGLDMKAHVHEKHLRTVKCTHCDYQGQELKMKEHMKRRHAESRDFLCNICSKTFCTLGVLNAHLKYHERKESNIKSDACEICGKVFSTNHYLKSHMLTHRDERELFECNNCDKTYHSKAALDNHMRMHKGDTIKCLLCSKQFARQYELNVHMRFHTKDYPFECELCGKKFAIKGHLRTHMWRHQGLKLQCEECGKLFTSTKALQEHSFCHSEMPFPCPYCAKAYPSKPKFKVHLKTAHMVEFSNDELQKMSKFPLPKRSRSKKFTLVQADTVMKEIEVHTKEEEEDNV*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00241030; iTF_01541624; iTF_01223712; iTF_01254251; iTF_00724995; iTF_00310476; iTF_00389841; iTF_00389378;
90% Identity: iTF_01541624;
80% Identity: -