Fcup008546.1
Basic Information
- Insect
- Ferdinandea cuprea
- Gene Symbol
- -
- Assembly
- GCA_963576555.1
- Location
- OY754958.1:159345848-159349629[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00082 0.12 13.7 0.3 1 23 147 170 147 170 0.97 2 11 0.81 1.2e+02 4.2 0.0 2 23 185 205 184 205 0.91 3 11 0.031 4.7 8.7 2.0 2 23 322 342 321 342 0.97 4 11 0.00029 0.044 15.1 2.1 1 23 348 371 348 371 0.97 5 11 0.00026 0.04 15.2 1.9 1 23 431 453 431 453 0.95 6 11 5e-08 7.6e-06 26.9 1.3 3 23 465 485 463 485 0.97 7 11 4.7e-05 0.0072 17.6 1.4 1 23 492 514 492 514 0.98 8 11 2.3e-05 0.0035 18.6 0.5 3 23 521 541 519 541 0.95 9 11 4e-05 0.0061 17.8 1.0 1 20 547 566 547 569 0.93 10 11 0.0016 0.24 12.8 0.2 2 19 575 592 574 594 0.95 11 11 8.1e-06 0.0012 20.0 0.2 1 23 601 624 601 624 0.98
Sequence Information
- Coding Sequence
- atgtTTGGTGCTCTGCCAATCTGTAGAGTGTGCTTAAAAACATCACTAGAATACATTGATTTTGACACACCCTTTGAAGTGGAATCAAACAAAGATGTTGAGAATGACCTGACGTATCTCGATTGTTTCCTCGCGTGTACGCGTCTCGAAGTTGAGCTCACCGAAAACTGTCCTCAAAGTTTATGCAGTGCATGTGGTTTGGAGCTTAAAATTGCTTATGAGTTCCTTCAAAAGGCGGAATCCGCTGATAAGGCCTTACGAGAATTTTCTGCAAATACTAAGCTGGAGAAAATTGAAGAAGATAATGAAGACGACGAGAGCAACAATGCCCTGTATGATCACTATGAATGCGATGAAGATGCTAGACATGATGATTTTAGTGCTGCTGATCATGAAACTAACGAACAAATAGTAAATCGAATTGATGAAGAGAAAAGTtatatttgcacaatttgcGGGGAGCAATTCTTCTCCCAATTTGTCCTAAATTTACATGTTAATCGATTGCATTCTGAACACACCGCTAATAAAAAATCTTTGGTTGAAAAAGTCGAATGTCAAATATGTGATCTGGTCATTCCACTAGCCAAATTGACATCCCACATGCAACTGCACGAAGAAAATAATAGCTTAGTCTTTGAATCGGGCTCTAATTTTGCATCCGGAAACAACAATGAACAGCTAATAGATGTTGGCGAGGACGCAGACTTTGAATTATTGGACATGACCAGCGATTCGACATTGGTAATGATAGATGACGCAAGTCAAATGGCAGAGTCacaggaagaagaagaagaaacaactACACCAGAAGAATATGAGTCAAATCTGGCTGAGGAGGAGAAAGGAGACAGTTTAGAGTTAAAAGTCGAGTCAGAGTACGAATTGGATAATAAGTTTTCGTTAATAGAAAAAATTTTGACGGACCAAGAGAAAAGACGTGTTACAAAGCCCAACTACAAGCGTTGCAATATTTGCAATCGTCACGTGAGAACGGTTTCTTTCCAGGCCCACATGAATGTTCACAATGgtaATCGTCAATTTGCCTGTGATCATTGCTCAGGggaatttttctcaaaaagatCCCTTCAAAAGCACATCAAGACTGCGCACAACGATCAGGTTAAATCTCTTTGTAGGATATGTCATGAATCGTTGGATGGTACCGATATGAAGACACATATTCAAGAGAATCATTTGCGGATCATAAAGTGCATTCATTGCGACTACCATGGTCAAGAGCTAAAAATGAAGGAGCACATGAAGCGAAGGCATGCGGAATCCAGGGACTTTTTATGCAACGTTTGCTCTAAAACTTTTTGCACACTTGGGGTACTTAATGCCCACTTGAAATACCACGAACGCAAGGAGTCCAAAGTCAAGTCAGACGCATGTAATATATGTGGCAAAGTATTCTCCACTAATCACTATCTTAAGTCACACATGCTAACGCACCGGGACGAGCGTGAACTCTTCGAATGCTCCAGTTGTGATAAGACATACCATTCGAAAGCTGCTCTGGACAATCACATCCGAATGCACAAAGGCGATACAATTAATTGCGTGCTATGTTCCAAGCAATTTGCTAGACAATATGAATTAAATGTTCATATGCGTTTCCACACAAAAGACTATCCCTTTGAGTGCGAGTTGTGTGGTAAAAAGTTTGCCATCAAAGGTCATCTAAGGACACATATGTGGCGTCACCAAGGCCTTAAATTACAGTGTGAAGAATGCGGGAAGTTATTCACGTCCACAAAAGCACTACAAGAGCACTCCTTTTGTCATACTGAGATGCCATTCCCATGTCCGTATTGCCCGAAGGCATACCCTTCGAAACCGAAATTCAAAGTGCATTTAAAGACTGCTCATATGGTTGAATTTTCAAATGATGAATTGCAAAAAATGAGCAAATTTCCGTTACCAAAACGATCTAGATCGAAGAAATTTACACTAGTTCAAGCTGACACTGTAATGAAAGAGGTTGAGGTCCACACCAAAGAGGAGGAAGAAGATCATCCATAa
- Protein Sequence
- MFGALPICRVCLKTSLEYIDFDTPFEVESNKDVENDLTYLDCFLACTRLEVELTENCPQSLCSACGLELKIAYEFLQKAESADKALREFSANTKLEKIEEDNEDDESNNALYDHYECDEDARHDDFSAADHETNEQIVNRIDEEKSYICTICGEQFFSQFVLNLHVNRLHSEHTANKKSLVEKVECQICDLVIPLAKLTSHMQLHEENNSLVFESGSNFASGNNNEQLIDVGEDADFELLDMTSDSTLVMIDDASQMAESQEEEEETTTPEEYESNLAEEEKGDSLELKVESEYELDNKFSLIEKILTDQEKRRVTKPNYKRCNICNRHVRTVSFQAHMNVHNGNRQFACDHCSGEFFSKRSLQKHIKTAHNDQVKSLCRICHESLDGTDMKTHIQENHLRIIKCIHCDYHGQELKMKEHMKRRHAESRDFLCNVCSKTFCTLGVLNAHLKYHERKESKVKSDACNICGKVFSTNHYLKSHMLTHRDERELFECSSCDKTYHSKAALDNHIRMHKGDTINCVLCSKQFARQYELNVHMRFHTKDYPFECELCGKKFAIKGHLRTHMWRHQGLKLQCEECGKLFTSTKALQEHSFCHTEMPFPCPYCPKAYPSKPKFKVHLKTAHMVEFSNDELQKMSKFPLPKRSRSKKFTLVQADTVMKEVEVHTKEEEEDHP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01542409;
- 90% Identity
- -
- 80% Identity
- -