Xseg005262.1
Basic Information
- Insect
- Xylota segnis
- Gene Symbol
- -
- Assembly
- GCA_963583995.1
- Location
- OY757237.1:11518673-11522508[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0013 0.097 13.2 0.4 1 23 150 173 150 173 0.97 2 12 0.96 73 4.1 0.0 2 23 189 209 188 209 0.91 3 12 0.044 3.3 8.4 2.1 2 23 324 344 323 344 0.97 4 12 0.00036 0.027 14.9 3.1 1 23 350 373 350 373 0.98 5 12 7.5 5.7e+02 1.3 2.8 2 23 406 427 405 427 0.87 6 12 0.00016 0.012 16.0 1.9 1 23 433 455 433 455 0.95 7 12 6.4e-08 4.9e-06 26.7 1.0 3 23 467 487 465 487 0.97 8 12 5.3e-06 0.0004 20.7 1.9 1 23 494 516 494 516 0.98 9 12 1.2e-05 0.00091 19.6 0.9 2 23 522 543 521 543 0.96 10 12 4.4e-05 0.0033 17.8 1.0 1 20 549 568 549 571 0.93 11 12 0.0017 0.13 12.8 0.2 2 19 577 594 576 596 0.95 12 12 1.9e-05 0.0014 18.9 0.3 1 23 603 626 603 626 0.98
Sequence Information
- Coding Sequence
- atgTTTGGTTCACTGCCAATTTGTAGGGTGTGTTTGAAAACATCACTAGAATATATTGACTTCGATACACCCTTCGAAGTTGAATCAACCAAGGAAGTCGAAAATGATCTCACGTATCTCGATTGTTTTCTGGCATGTACGCGTCTTGAAATTGAACTGACTGAGAATTGTCCACAAAGTTTGTGTAGTGCGTGCGGACTGGAATTAAAAATTGCTTATGAATTCATCCAGAAGGCTGAATCTGCCGATAGAACCTTGAGAGCAATTGCATCGAATACGAAGCTAGAGAAACTGGATGAGGATGAGGAGAACTTAATCCTTCAGTCAGATGGCAATGTCTTGTATGAGAATTTTGTTAGTGAAGAAACTATAAAACAAGATGTGTTCAATTCTGGTGATAATGAACCAACTGAGCAAGTAgagagtcaaatggatgaagagAAAAGTTTTGTGTGTACAGTATGTGGAGAACAATTCTTCTCACAGTTTGTTCTTAACTTACATGTTAACCGATCACATTCCAACGATTATAACGAAGAGGACAAGCTCTCAGTTGCTAAAGTTGAGTGTCAGATTTGTGATCTAGTCATACCGTTGGCAAAATTAAACTCTCACATGCAGCTACATGAAGATGCAAACAGTTTAGACTTTGAGTCTGGTTCCAACTTTGCTACAGCAAATAACGATGAACAGCTTATAGACGTTGGTGAAGAAGCAAACTTCGAAATATTAGATATGACTGGTGATTCGTCATTGGGCATGACAAACAATGCAAGCGCAGTGGAGGAGTCACAAGAAGAAGACACTATTGCTCCAGAAGAATATGAACAAATTCCAGCTGACGAAGAGTTAGAAAGTGATCATAGGTTAAAAAGCGAATCACAATTCGATCTCGACAGCAAGTTCGCTGTGATAGAAAAGATCTTAACGGACCAAGAAAAAATGCGTGTGACTAAGCCAAATTATAAGCGTTGTACGATCTGTAATCGTCATGTACGAACTGTGTCATTCCAGGCGCACATGAATGTCCACAACGGTATTCGGCAATTTTCATGCGAACATTGCCCTGGAAATTTCTTCTCAAAACGATCGCTTCAAACGCATATAAAAACTACGCACAAAGACCAGTTGAAATCCATTTGCAGAATATGTCATGAATCCGTAGACGGTTTAGACATGAAAGCACATGTTCACGAGAAGCATTTGCGAACAGTCAAATGTACTCACTGTGATTATCAGGGACAAGAGCTGAAGATGAAGGAACATATGAAGCGAAGGCATGCTGAATCTCGGGACTTTCTGTGCAACATATGCTcTAAAACATTTTGTACGCTTGGTGTACTCAATGCTCACTTGAAATACCATGAACGCAAGGAATCTAATATCAAATCAGACGCATGCGAAATATGCGGCAAAGTGTTCTCCACCAATCATTATCTCAAATCACACATGCTAACGCATCGAGACGAGCGTGAATTATTCGAATGCAATAATTGCGATAAGACCTATCACTCGAAGGCTGCCCTGGACAATCACATGCGAATGCACAAAGGTGACACAATCAAGTGCCTTTTGTGTTCCAAGCAATTCGCACGACAATATGAACTAAATGTTCACATGCGTTTCCACACCAAAGACTATCCGTTCGAGTGTGAACTTTGTGGTAAAAAGTTCGCAATTAAAGGTCATTTGAGGACACACATGTGGCGTCATCAAGGTCTCAAGTTGCAATGTGAAGAATGTGGCAAACTCTTTACATCCACTAAAGCGCTCCAAGAACACTCTTTTTGTCACTCTGAGATGCCTTTCCCATGTCCTTATTGTACAAAAGCGTACCCTTCGAAACCAAAATTCAAAGTCCATTTGAAAACTGCTCACATGGTGGAATTTTCAAATGATGAATTGCAGAAAATGAGCAAATTCCCTTTGCCAAAACGATCTAGATCGAAGAAGTTCACTTTAGTTCAGGCTGATACCGTTATGAAAGAAGTTGAAGTTCACaccaaagaagaggaggaagagcATGTATAA
- Protein Sequence
- MFGSLPICRVCLKTSLEYIDFDTPFEVESTKEVENDLTYLDCFLACTRLEIELTENCPQSLCSACGLELKIAYEFIQKAESADRTLRAIASNTKLEKLDEDEENLILQSDGNVLYENFVSEETIKQDVFNSGDNEPTEQVESQMDEEKSFVCTVCGEQFFSQFVLNLHVNRSHSNDYNEEDKLSVAKVECQICDLVIPLAKLNSHMQLHEDANSLDFESGSNFATANNDEQLIDVGEEANFEILDMTGDSSLGMTNNASAVEESQEEDTIAPEEYEQIPADEELESDHRLKSESQFDLDSKFAVIEKILTDQEKMRVTKPNYKRCTICNRHVRTVSFQAHMNVHNGIRQFSCEHCPGNFFSKRSLQTHIKTTHKDQLKSICRICHESVDGLDMKAHVHEKHLRTVKCTHCDYQGQELKMKEHMKRRHAESRDFLCNICSKTFCTLGVLNAHLKYHERKESNIKSDACEICGKVFSTNHYLKSHMLTHRDERELFECNNCDKTYHSKAALDNHMRMHKGDTIKCLLCSKQFARQYELNVHMRFHTKDYPFECELCGKKFAIKGHLRTHMWRHQGLKLQCEECGKLFTSTKALQEHSFCHSEMPFPCPYCTKAYPSKPKFKVHLKTAHMVEFSNDELQKMSKFPLPKRSRSKKFTLVQADTVMKEVEVHTKEEEEEHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01542409;
- 90% Identity
- iTF_01542409;
- 80% Identity
- -