Xseg015891.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xylota segnis
Gene Symbol
ham
Assembly
GCA_963583995.1
Location
OY757239.1:63674950-63704381[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.23 17 6.1 0.1 2 21 279 298 278 301 0.87
2 9 0.011 0.8 10.3 1.5 1 23 308 331 308 331 0.93
3 9 9.6e-08 7.3e-06 26.2 2.4 1 23 337 359 337 360 0.96
4 9 1.3e-06 9.7e-05 22.6 1.7 1 23 366 388 366 388 0.95
5 9 3.2e-05 0.0024 18.2 5.0 1 23 394 416 394 416 0.99
6 9 0.00015 0.011 16.1 1.1 2 21 424 443 423 444 0.95
7 9 5e-09 3.8e-07 30.2 1.3 1 23 858 880 858 880 0.99
8 9 2.7e-07 2e-05 24.8 0.9 1 23 886 909 886 909 0.97
9 9 4.6e-05 0.0035 17.7 6.6 1 23 915 937 915 937 0.98

Sequence Information

Coding Sequence
ATGAACGAACGAAGAGCATACACAACACGACACGCCACCACCGACGAGGGTATACGAACATCAGTTGGGAGTAGTGGTGATGAGTTCGAGCCGATTAATCGCCACAATCCGCACAGTCTAAGTCAACAGGCCGAGGAGCACGAGTTGCAGGACTATCGGCGGTACGCGAGTGCCCAAAATATATCCCTGAATCCTATGGACCAATTGTACAACAAGGCGCTTCATGAGCGATCGGCGGAGCGTTTTCTGTCGGAAATGGCTCGGCTGCATGAACCCATATGTGATTTGGACATACGCGAGAACGGCGTGTATGCCAAGGTGCTCCTTCGACGAGGCACCCGATTCGGACCGTTTGCGGTGAAATTGTGCAATGAGCCCACCGACCGGAAACTAGCCTGGGAGGTTATGGCCAGTGCACACTTTCGAGGCTGGCTAGAACCAATGCCTGACGTCTCGACATGGTTAAGGAAAATCCGTTCAGTTAACAATGCCAAAGAAGCTAATCTGCATAATTTCATAGTCGAAGGATACCTGTGGTACGAGGCAATCCGGGACATCCCAGCTGGAGAGGAGATATCCGTTGATTCTGAGTCCAAGGGGCTGCTGCATTTAAATGATATTTTCACAGGCACCGGTTTCAATGCCGACGACAGGAGTGAGAAGGAAAATGGATCTCAATACAGTGGGAACACAACTGGTGATGACGAGTTTAATACATCATCAAACGATCAGGATAATAATATTAAAAGTGAGAATAATCTACGAAACGTTGACAAAAGTGATAAGGTACCTGGGGACCACCCGGATACGGATGACGAGAACGGTATCGATATACGCTGTGAAGTTTGCGACAAACAGTACCACGATTTAGATAGGTTAGACGAGCATTTGGTCGCAGCACATCATTATCGCAAGGACGAGTACAACTGTGATTTGTGTGTGAAGAGCTATTGCTATCGGCCGTCTTTGTTGAAGCATCGTGCATTGGTTCATAACGATATAAGGAAATATCCTTGTGAAAATTGCACCAAGgttttttgtGATCCATCAAATCTTCAGAGGCATATTCGTGCCCACCACGTCGGCGCTAGAAGTCACGCGTGTCCGGAGTGCGGTAAAACATTCGCAACGTCGTCCGGTTTGAAGCAGCATACGCACATCCATTCATCGGTGAAGCCATTCCAGTGTGAGGTCTGTTTCAAGGCGTACACGCAATTCTCGAATTTGTGCCGTCACAAGCGAATGCACGCCGATTGTCGCATGCAGATCAAATGCAATAAGTGTGGCCAGAGTTTCAGCACGGTGACATCGCTTTCGAAGCACAAACGGTTCTGTGATTCAACAACGTCAGCGACGCCCACAGGGATACCGCCCCACCACCATCCGCATCATCCTCATATGCCGCACCATCAGTCGGTTGCTGCTCATTCCAGTCCATCGGCACAGGCACGCGGTTTGCAGGCGAACGGAATCCCACCGTCAGCAATgaatacgccaccgaatccgTTTTTCATGTTCCGCGGTCCGCCTACCTTCTTTCCGCCCGGATTCCCGTCGTACGGGCTGCAGGGAATGTTTCCACCGAGTCCAGCTCAGGCGTCGAACTTCCCGCTTTTGTTTCCGAAGTCCGCAATGGATATCACAATCCCGCCGGTGGACAAGGAACCAACTTCACCGCCAATGAGGCATTTGAGTCACCACGCTCGCAGAACTTCGATGGACAAGAGCTACTTCGCCCAGAACGCCATCAACATGCACCGTGTGGAGAACGGAGATCGAACGGATGTGAAGCCAATAGTGCTGCCGCCGGAGACAGGAAAGATCAGCGTGCATTCGCCACGCAGTTCGCATTCAAGAGCATCAGACGATGAAACGAGTTCCTCTATTATCGAGACGAAGCCCATCGAGGAAGTAATCAAAACCGAGGAGCCAGACCCAGAACCAGAACGAGCAGAGCCAGAGCACGCCCATGATAATGATCAGGATCAGGACTCAGGCGACGATAAGAAATCAATCAATGTGACTACCCCGTCACCACCCATCCCGGAGGAGACGTCCACGTCAAACGGGGAGCAACCACTCGACTTGTCGGTGGGAAGAAAGCGAAAGTTAGATGACGACAATACGTCATGCGCCAGAGAGCTTCCCCCCGTTGTCACGAAAAATAACAAATCAACCGCAGCAGGCGAGGACAACGAACCTGAGAGGAAGCGCACGCCATCCACGGAAGTCCCTCACCAATCGTACAGTCCCACGCCATCTGTGTCGCCAGGTCCTACACCATCGCCATCTCCGCCGAACAATGGACCGGCCGCCATGGCATGTCCTCGCCCGATTCACCCAATGCTGATGGCATTCTACAGCCAAGCCCGGCCACCAGGCTTgggagttggagctgatttctCACGGCCGTTTCCTTTTTTAGGACCAATGGGCGGACGGCCAACTTTTGATCACTTGCTTCACCGTAATGGACCGTTTCCGCCCAAGCCGACGTTTCACGAAGCCCTAATGGCCGCAGGAGGAATATCTGGCGGGCTAACGGCTGCAGCGGGCAAAATCAAAGACCGATACACCTGCAAGTTCTGTGGCAAAGTATTCCCCCGATCGGCAAACCTCACCCGACATCTGCGCACGCACACCGGCGAACAGCCCTACACCTGCAAGTACTGCGATCGCGCCTTCAGTATCTCGAGCAATTTACAACGGCACGTGCGTAACATCCACAACAAGGAACGACCATTCAGATGCCACCTCTGCGACCGGTGCTTCGGTCAGCAGACCAACCTCGACAGACACTTAAAGAAGCACGAGGCTGACACAACGGGCCTCGGAATCGGCCTAGGCGACTCGCCCTCATCCAACGAAGCCGACCGCGAGGACTCGTACTTTGACGAAATTCGGTCCTTCATGGGCCAGGTAACATACAACGAAGATCTGTACACACCCACAAGCATCGGTGGCGGTGAGAACGACACCGAATGCAGCAGCGATGTCGAGAACGACATCACGCCCAGCAGTACCAAAGACACGATGAACAACAACGACGCCGCCATCGAGGTCACCACATAG
Protein Sequence
MNERRAYTTRHATTDEGIRTSVGSSGDEFEPINRHNPHSLSQQAEEHELQDYRRYASAQNISLNPMDQLYNKALHERSAERFLSEMARLHEPICDLDIRENGVYAKVLLRRGTRFGPFAVKLCNEPTDRKLAWEVMASAHFRGWLEPMPDVSTWLRKIRSVNNAKEANLHNFIVEGYLWYEAIRDIPAGEEISVDSESKGLLHLNDIFTGTGFNADDRSEKENGSQYSGNTTGDDEFNTSSNDQDNNIKSENNLRNVDKSDKVPGDHPDTDDENGIDIRCEVCDKQYHDLDRLDEHLVAAHHYRKDEYNCDLCVKSYCYRPSLLKHRALVHNDIRKYPCENCTKVFCDPSNLQRHIRAHHVGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCEVCFKAYTQFSNLCRHKRMHADCRMQIKCNKCGQSFSTVTSLSKHKRFCDSTTSATPTGIPPHHHPHHPHMPHHQSVAAHSSPSAQARGLQANGIPPSAMNTPPNPFFMFRGPPTFFPPGFPSYGLQGMFPPSPAQASNFPLLFPKSAMDITIPPVDKEPTSPPMRHLSHHARRTSMDKSYFAQNAINMHRVENGDRTDVKPIVLPPETGKISVHSPRSSHSRASDDETSSSIIETKPIEEVIKTEEPDPEPERAEPEHAHDNDQDQDSGDDKKSINVTTPSPPIPEETSTSNGEQPLDLSVGRKRKLDDDNTSCARELPPVVTKNNKSTAAGEDNEPERKRTPSTEVPHQSYSPTPSVSPGPTPSPSPPNNGPAAMACPRPIHPMLMAFYSQARPPGLGVGADFSRPFPFLGPMGGRPTFDHLLHRNGPFPPKPTFHEALMAAGGISGGLTAAAGKIKDRYTCKFCGKVFPRSANLTRHLRTHTGEQPYTCKYCDRAFSISSNLQRHVRNIHNKERPFRCHLCDRCFGQQTNLDRHLKKHEADTTGLGIGLGDSPSSNEADREDSYFDEIRSFMGQVTYNEDLYTPTSIGGGENDTECSSDVENDITPSSTKDTMNNNDAAIEVTT