Onob007647.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Orthonevra nobilis
Gene Symbol
ham
Assembly
GCA_963555765.1
Location
OY743224.1:169221183-169250566[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.22 25 6.1 1.3 2 23 265 287 264 288 0.92
2 9 0.0002 0.023 15.7 1.2 1 23 294 317 294 317 0.93
3 9 9.3e-08 1.1e-05 26.2 2.4 1 23 323 345 323 346 0.96
4 9 1.2e-06 0.00014 22.7 1.7 1 23 352 374 352 374 0.95
5 9 2.6e-05 0.0029 18.5 6.0 1 23 380 402 380 402 0.99
6 9 0.00018 0.021 15.8 0.8 2 21 410 429 409 430 0.95
7 9 4.9e-09 5.6e-07 30.2 1.3 1 23 836 858 836 858 0.99
8 9 2.6e-07 3e-05 24.8 0.9 1 23 864 887 864 887 0.97
9 9 4.5e-05 0.0051 17.8 6.6 1 23 893 915 893 915 0.98

Sequence Information

Coding Sequence
ATGTTGTTCGATCGTTATGCAATGTCAGgGAGTAGCGGTGATGAGTTCGAGCCCATTAATCGCCACAATCCGCACAGTTTGAGTCAACAGGCCGAGGACCACGAACTTCAAAATTATCGACGTTTCGCGAGTGCACAGAGTATCTCCATGAATCCCATGGACCAACTGTACGGCGGTAGCACTAAGGCCCTGCATGAACGTTTCCTATCGGAAATGGCACGCCTGCATGAACCCATATGTGATTTAGACATACGCGAGAACGGCGTGTATGCCAAGGTACCCCTTCGCAGAGGCACCCGATTTGGACCGTTTGCAGTAAAGTTGTGCAATGAGCCCACCGACAGGAAACTAGCCTGGGAGgtTACGGCTGGTGCCCAATTTCGAGGCTGGATAGAACCAATGCCAGAGGTCTCGACCTGGCTTAGAAAAATCCGCCAAGCAACAAACGCCAAAGAAGCTAATCTCCACAATTTCTTCGTCGAAGGATACATCTGGTATGAGGCGATTCGGGACATCCCAGCTGGTGAGGAGATATCCGTTGATTCCGAGTCAAAGGGCCTGCTgcatttaaatgacattttcacAGGAAGCGTTTTTAACGCTGACGACAGGAGTGAGAAGGAAaatgGATCTCAATACAGTGGGAACACAAACGGTGATGACGAGTTCAATAATTCGTCGAACGATCAGGATAATACAATCAGAAGTGAAACTAATACTCGAAGCAGTGAGAAAGGTGATAAAGTATCTGGGGAACAAGCTGACACGGATGACGAGAACGGAATTGATATACGCTGCGAAGTTTGTGACAAACAATACCACGATCTAGATCGGTTGGACGAGCATTTGGTGTCTCAACATCACTTCCGAAAGGACGACTACGCTTGTGATTCGTGTGGGAAGAGTTTTTGTTATCGACCGTCTTTGCTGAAGCATCGTGCATTGGTTCATAACGATATCAGGAAATATCCTTGTGAAAACTGCACCAAGgttttttGTGATCCATCAAATCTTCAGAGACATATTCGTGCCCACCACGTCGGCGCTAGAAGTCACGCGTGTCCCGAGTGCGGTAAAACATTCGCTACATCGTCCGGTTTGAAGCAGCATACACACATCCACTCATCGGTGAAACCATTCCAGTGTGAGGTTTGTTTTAAGTCATATACGCAATTCTCGAACTTGTGCCGTCATAAACGGATGCACGCCGATTGCCGCATGCAAATCAAATGCGATAAGTGTGGTCAGAGCTTTAGTACGGTGACATCGCTATCAAAGCACAAACGGTTCTGTGATTCAACATCGGCAGCGCCGCCTACTGGTTTACCAACTCATCATCCGCATCACCCTCATATGCCGCACCATCAGTCGGTTTCGAGCCATTCCAGTCCATCTGCACAGGCACGTGCACTGCAAGCAAGCGGAATTCCACCATCTGCAATGAATACACCACCAAATCCATTCTTTGTGTTCCGCAACCCACATAACTTCTTTCCAACTGGATTTCCATCGTATGGCTTGCAGGGAATGTTCCCACCAAGTCCAGCGCAGGCATCGAACTTCCcgcttttatttccaaaaagttcGATCGATATTACAATCCCACCGCTGGATAAGGACTCGATTTCTCCGCGAATGAGACACTTGGTTCACACACGCAGAACTTCACTGGACAAGAGTTACTTTGGCCCAAGCAGCGCCATCAACTTGCATCGTCCTGAGAACGGTGATCGAGGAGCGGACGTTAAGCCAGTTGTGCTGCCATCCCCCGAAGCTGTCAAATTCAATCCACAGTCGCCACGAAGCAACCAATCAAGAGCGTCTGATGATGAAACCAGTTCGTCCCCCATTGACACGAAGCCCAGTAAAGATGATTTAAAAACGGAGCCTGAAACAGAGCAAATTGATAACGAGCAGGACCAGGATTCGATTGATGATAAGaaatCCATTAATGTGACAACGCCATCACCACCAATTACCGAAGAGACATTCACGTCGAACGGAGAGCAGCCCCTCGATCTGACAGTTggaagaaaacgaaaacaagaagaCGAAAGTCCTGCTGATACTCTACAAGATATTTCCACCAAATCAAGCCGTTCGAATTCAATTGGGGACACTGAACCTCTAAGAAAGCGTTCGCCATCCACAGAAGTTCCTCATCAATCCTACCAGGTCAACAGTCCCACGCCATCAGTGTCACCTGGACCGACACCATCGCCATCGCCTCCGAGTAACAGACCAACTGCAATGGCATGTCCTCGGCCGATTCATCCAATGCTGGTGGCGCTTTACAGTCAGGCCGCACCAGCAGGTTTGGGCGTTGGAGGGGACTTCTCACGGCCGTTTCCTTTTTTAGGACCAATGGGCGGACGGTCAAGTTTTGACCATTTGCTGCACCGTAACGGACCGTTTCCGCCCAAGCCCACATTCCATGAAGCTCTAATGGCCGCAGGAGGAATCTCCGGTGGACTTACAGCCGCGGCAGGCAAGATTAAGGATCGATATACCTGCAAGTTTTGCGGCAAGGTGTTTCCAAGATCGGCAAACCTCACTCGTCACTTGCGTACTCACACGGGGGAACAGCCATACACTTGCAAATACTGCGATCGCGCCTTCAGCATATCCAGCAATCTACAGCGACACGTTCGCAACATTCACAACAAGGAGCGACCATTTAGATGTCACCTCTGTGACCGGTGCTTCGGCCAACAGACGAACCTCGATAGGCATCTAAAAAAGCATGAAGCGGACACGACGGGTCTTGGAATAGGCTTAGGCGACTCACCCTCATCAAATGAAGCCGATCGCGAGGACTCATACTTTGATGAGATCCGCTCCTTCATGGGCCAAGTAACGTACAACGAAGACTTATATACGCCCACAAGTATCGGTGGCGGAGAGAATGACACCGAATGCAGCAGCGATGTCGAAAGTGACATGCCGCCCAGCAATACCAAAGACACCATGAACAACAATGACGCCGCCATCGAAGTCACCACATAG
Protein Sequence
MLFDRYAMSGSSGDEFEPINRHNPHSLSQQAEDHELQNYRRFASAQSISMNPMDQLYGGSTKALHERFLSEMARLHEPICDLDIRENGVYAKVPLRRGTRFGPFAVKLCNEPTDRKLAWEVTAGAQFRGWIEPMPEVSTWLRKIRQATNAKEANLHNFFVEGYIWYEAIRDIPAGEEISVDSESKGLLHLNDIFTGSVFNADDRSEKENGSQYSGNTNGDDEFNNSSNDQDNTIRSETNTRSSEKGDKVSGEQADTDDENGIDIRCEVCDKQYHDLDRLDEHLVSQHHFRKDDYACDSCGKSFCYRPSLLKHRALVHNDIRKYPCENCTKVFCDPSNLQRHIRAHHVGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCEVCFKSYTQFSNLCRHKRMHADCRMQIKCDKCGQSFSTVTSLSKHKRFCDSTSAAPPTGLPTHHPHHPHMPHHQSVSSHSSPSAQARALQASGIPPSAMNTPPNPFFVFRNPHNFFPTGFPSYGLQGMFPPSPAQASNFPLLFPKSSIDITIPPLDKDSISPRMRHLVHTRRTSLDKSYFGPSSAINLHRPENGDRGADVKPVVLPSPEAVKFNPQSPRSNQSRASDDETSSSPIDTKPSKDDLKTEPETEQIDNEQDQDSIDDKKSINVTTPSPPITEETFTSNGEQPLDLTVGRKRKQEDESPADTLQDISTKSSRSNSIGDTEPLRKRSPSTEVPHQSYQVNSPTPSVSPGPTPSPSPPSNRPTAMACPRPIHPMLVALYSQAAPAGLGVGGDFSRPFPFLGPMGGRSSFDHLLHRNGPFPPKPTFHEALMAAGGISGGLTAAAGKIKDRYTCKFCGKVFPRSANLTRHLRTHTGEQPYTCKYCDRAFSISSNLQRHVRNIHNKERPFRCHLCDRCFGQQTNLDRHLKKHEADTTGLGIGLGDSPSSNEADREDSYFDEIRSFMGQVTYNEDLYTPTSIGGGENDTECSSDVESDMPPSNTKDTMNNNDAAIEVTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01541612;
90% Identity
-
80% Identity
-