Xseg004046.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xylota segnis
Gene Symbol
rfx7.L
Assembly
GCA_963583995.1
Location
OY757236.1:117781830-117787794[+]

Transcription Factor Domain

TF Family
RFX
Domain
RFX domain
PFAM
PF02257
TF Group
Basic Domians group
Description
RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 2.7e-32 2.4e-28 98.5 0.0 3 78 265 340 263 341 0.97
2 2 0.87 7.8e+03 -2.4 0.0 22 41 1148 1167 1142 1174 0.83

Sequence Information

Coding Sequence
ATGTCCGAGAAAAATGTACACCAATTGCAATGGAAACAAAAGAATTCAGATCAATCGATTTATGCCTCACGAAATGTGGACATCCAGGGGTCAGGAACGAATGTTAATCAGGCAGCAGCTTCGGCTGCAGTTGCAAATCATCCATCACATTCGTCGACAGCACTTGGAACGGCTTCCAATGGACGTTATCCGATAATTGTGTCGGGTAGTCAGCAGACTGCAACCTCTCCAGGAGCTTCGACTTCATCGTCAACAAATCCAATTGGTTTGCAACAACATTTTCATCACATGCAACaccttcaacaacaacaacagcaacaacaacaacaacaacaacagcagcagcaacaacaacagcagcaccatcatcctcaccatcaccatcaacagAATCCGCATTTTGAATTATCCAAGATAATGGCTATTAATTCGGGAGCATTGTCCAGACTGGAGCTGCCTCCAACTTTAGGCAATCATCCAGTGTCGAGTACGATTACCGAGAATGTTTTAAGTCTGATTGGGATGTCCAGCAGCGGGAGTGGTAGTAGTTCAAATAGGACCAGCGATGCCATCAAGATTCCTGATGAAGAGAAATTGCGAAAAGTTCAAGCTGTTGTGGAGTCTGGTATTGGTGACCACGCTAAGCAACAAATCCTGCAAATTCTTGATAGAATTTCCACACTTAAACCAGTTGAACGCTTACTTTTGTACCTTCGTATGCCAGGAGAAACACCAGAATCAGATCCCCTGCGTCAGCCACAAAATCCCTTAGGAACTAGATCTGAAATTAATCACACTATCAATTGGGTTCGTTCACATTTGGAGCACGATCCGAAGGTTTCCATTCCAAAGCAAGATGTTTACAACGATTACATAGCATACTGTGAGCGTTTGGATATAAAACCTCTGTCGACAGCTGATTTTGGTAAAGTAATGAAGCAAGTGTTTCCCGAAATTCGCCCTAGGCGTTTGGGAACACGTGGTCATTCTCGATATTGTTACGCAGCgatgagaaaaacaacaaaactaacACCACCGCAGCTTCCAATGCTCGGTGGAAGAACTATTGATGCAGTAAGCAGTGAAATTGAGTGTGACACAGACACAGAATCATGGAATACGGTACGAACCTGGGCCGAAGGAATGCTTAACACAAAATTCGAAAGTATGAAGGATTTAGCTGAACATATTGGTAAGAATGAGTATGGAGTTGGAGGAGCTGGTAGCTCGCGAGTCTTGctgcaaaaaaaattactacaaAGGGACGCAAAGGAGAAGAGGGTTTATGCGgactcGGGACCACTTAAAAAACGACGAAAGAAAAAACGCAAAGGTTCAACATCGTCCGAATCGAGTACAACACAAAATGCGTCGTCCGTGGGGTCGCTTAACGAACCATCGAGATCCAGCGATGACGTTCTCCTCGGGCCAAATGCAATCAAACAAGAAATTCTAGATTCACCAAACTCGCAGACCAGGTTACCAGCACCAACACAGATGATTTCCCAACATCCAAATACGGTCTATGATAACCAAATGCTTGGACATCAGCTGCTTCCGATGAATTTAGCCACAGAGAATGAGCGCAGCAAGACCATATGCCCCGGTGGTGCATTACCTATAAACAGTCAAGTGGCGAAAAATCTTACAAAAACAATTGCAGACCTACCACCATCGGTGAGCCTATTGCCAATCGATTCACAAACAGCACAATTAGCCTCCGTCAAAGAGGAGATAATCAACGACGAATACAATCCTCAAAATGTGATATGCAAAAAGGTACGAAGGGCACACTTGGCAAAGGGTATTTTAGCTACAAGCAACCCTCCATCTTCAACAATCACCGCCACCACAATTGAATCACAACCTGTGCCTCCAGTAATATTACAAACAGCAGCTGTTAGTAACTACTCTATGGGACCACCAGCACAGATCACGACGACTGCAATGGAATCAGCAAAATTAGCCTCTGTACGTGCAAGAAAAATGCGACTACTTCAAGCCCACACTGAAATGTATCAAACGTACGATCCacagcaacagcatcagcatcagcaccagcctcagcatcaacaacagcaaccatCTCCACTGGTGGATAATGTAGAAATAACAGAAGACAAAGATGTGGTATTACCAGAAAATCTAGGCCTACCACGTGAGCGTGTAATTAGTATTTGTAACATGGATAAACATGAGCTAGATGATTACTTGAATGCGAACGATGAAGAAAACTCTCAGGATCAAGAAGCGGAATTGCTTCAATATTTTCAGACGGGAGACGCTgagaacaacaacaataataacaaagcaacacagcagcaacaacagcagcagcaagaaAATGTAGATGCGCATAACCCAACGTTGGCAGGAATCAACTCAAATTCGGCATTTGAAGTACccaataaaaagaaatcaattgCTACAACTGGCGGCTTTTTCACAAGAGATCGTGAAGACATCACACAGCTTCGTAATTATCTTCATCAGAATTTTAATAAAGATTCTAATGATTCGATGGGAGCCTTAGCCGCAGCTACAGCAGTCAATCAGAGGGGAAATGTCCAAGGACAGAAATTTCCAACGAATGGAAATCATTACAACATGCCGGGCATTTACAACGAAGGGTCAGCCTCAGCGTCTCTAGCAATCATGTCTCAAAAGCATCTAAACGAAACAGCATCACCATCGGTAGCGGGAGTCGCCGCTGCAACAGCAGTAACTACGACTTCTACTGCATCTGGTGGCATTACCCCATCATCAACAGTGGATCTTTCGATTATATCAATCGATGATTATACGCCTGTTCCAAACAATGTGCGCGCAacgcagaaaagaaaaatcaatttaaacgcAATGGTACCTGCTCCCAGTACAACGCAACGGCGAAAGAACTGCACTTTCTTTCCAATTTCGCCAAATATAAATCTAAATAATATCACAACAAACAGCACCTCGTCTGTATCGTGCACCTCCTCTATGTCAGCATCAAACAATACAACTCTATTTGCTAGTCCAAGATTGACAACCTCGCTGGTGCGCACTAAACCAATGCTGCACAAACAGCAATCATTACCGGACAAGAATGTGATCCCGTCCGCCAACGATCCAATGATCGGAGCTAGTCGCAACAATAGAAACTATAGCACAATGGCCTCAGCGTCAGCGCCACCAAGCCCTTCGATACTACAGGATACGATGATGTTTGGTAAAAGTTACAATAGCGGCAATACTAACAATCCTGTCGGGGGATATAATTTACTTTTATCCAATCAAGACTATCAGCATAACTTTGCAAACTCATGTGGTACCAGCAAAATGTTAACAAACGACCAAAACTCATTGGAATGTGTCCTAGATGAACCACCACCACATCTGTTGGCGGAATCGCGTTCACGTAGTGTTCCACTACAATACCGCAACAGTCCTGCCTTTAATCAAAATGCAAGCTATGCCGGATTCTCGTCGACTTGCAGCTCAGCTGCACAGACCCCAGTGCCGCCACAATTTGCCGACTTCAGTGATCCATCATCAATTTTGGATATTTTCAGCGATGCCAGTCAAACGCATGGATCAATTAAAATCGAAGAATCTACCGGTGGTCTACTATCCGGTTCGGTTGCTGATATTCTACCACCAGACTATAGTAGAATTCCGAATAATTTCGGTGGAATTGTTTCGCGTTCAGTGCCATCCACGCCGTTGCCGCTACATAATATGATTGATCCATTTTTGGGCAGCAAAAAACATCAGCAACAGCAAGACATCTTCCCGAGTGCACAAAGTAAATATTCAACGAAAATGTACGACATTTCAAAGTCCATGCCTACGACACCAATTACATCAAATACGGCCACACCCTCGTTCCGCTATAGTCCGGAATTTAATCGTGATTTTCTAATCAACGGTAATACAGTGGAAAGTACGCCGGCTTATAGCCGTGCGCCATCTGTTGCAGCAGCTGCAGCACCTAGTCTATCTGATTCATTGCTTGATGATGCCAGAGAGGGTGGTTCTAATTCGCTTACCGATGGAATGGATGATTTGGGCAGTTTCGGCGAGGTATCCGAGTCAATTATCGAGGCGGACATATTGAATATGAATAATCTTTGA
Protein Sequence
MSEKNVHQLQWKQKNSDQSIYASRNVDIQGSGTNVNQAAASAAVANHPSHSSTALGTASNGRYPIIVSGSQQTATSPGASTSSSTNPIGLQQHFHHMQHLQQQQQQQQQQQQQQQQQQQQHHHPHHHHQQNPHFELSKIMAINSGALSRLELPPTLGNHPVSSTITENVLSLIGMSSSGSGSSSNRTSDAIKIPDEEKLRKVQAVVESGIGDHAKQQILQILDRISTLKPVERLLLYLRMPGETPESDPLRQPQNPLGTRSEINHTINWVRSHLEHDPKVSIPKQDVYNDYIAYCERLDIKPLSTADFGKVMKQVFPEIRPRRLGTRGHSRYCYAAMRKTTKLTPPQLPMLGGRTIDAVSSEIECDTDTESWNTVRTWAEGMLNTKFESMKDLAEHIGKNEYGVGGAGSSRVLLQKKLLQRDAKEKRVYADSGPLKKRRKKKRKGSTSSESSTTQNASSVGSLNEPSRSSDDVLLGPNAIKQEILDSPNSQTRLPAPTQMISQHPNTVYDNQMLGHQLLPMNLATENERSKTICPGGALPINSQVAKNLTKTIADLPPSVSLLPIDSQTAQLASVKEEIINDEYNPQNVICKKVRRAHLAKGILATSNPPSSTITATTIESQPVPPVILQTAAVSNYSMGPPAQITTTAMESAKLASVRARKMRLLQAHTEMYQTYDPQQQHQHQHQPQHQQQQPSPLVDNVEITEDKDVVLPENLGLPRERVISICNMDKHELDDYLNANDEENSQDQEAELLQYFQTGDAENNNNNNKATQQQQQQQQENVDAHNPTLAGINSNSAFEVPNKKKSIATTGGFFTRDREDITQLRNYLHQNFNKDSNDSMGALAAATAVNQRGNVQGQKFPTNGNHYNMPGIYNEGSASASLAIMSQKHLNETASPSVAGVAAATAVTTTSTASGGITPSSTVDLSIISIDDYTPVPNNVRATQKRKINLNAMVPAPSTTQRRKNCTFFPISPNINLNNITTNSTSSVSCTSSMSASNNTTLFASPRLTTSLVRTKPMLHKQQSLPDKNVIPSANDPMIGASRNNRNYSTMASASAPPSPSILQDTMMFGKSYNSGNTNNPVGGYNLLLSNQDYQHNFANSCGTSKMLTNDQNSLECVLDEPPPHLLAESRSRSVPLQYRNSPAFNQNASYAGFSSTCSSAAQTPVPPQFADFSDPSSILDIFSDASQTHGSIKIEESTGGLLSGSVADILPPDYSRIPNNFGGIVSRSVPSTPLPLHNMIDPFLGSKKHQQQQDIFPSAQSKYSTKMYDISKSMPTTPITSNTATPSFRYSPEFNRDFLINGNTVESTPAYSRAPSVAAAAAPSLSDSLLDDAREGGSNSLTDGMDDLGSFGEVSESIIEADILNMNNL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01541899; iTF_00309959; iTF_00240403; iTF_00389363;
90% Identity
iTF_01541899;
80% Identity
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