Cnem010638.1
Basic Information
- Insect
- Chalcosyrphus nemorum
- Gene Symbol
- rfx7.L
- Assembly
- GCA_949716465.1
- Location
- OX454333.1:76152940-76160287[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-32 2.1e-28 98.8 0.0 3 78 264 339 262 340 0.97 2 2 2 2e+04 -4.0 0.0 26 41 1148 1163 1143 1166 0.82
Sequence Information
- Coding Sequence
- ATGTCCGATAAAAATGTACACCAGCAGATGcagtggaaacaaaaaaatccgtCGACCACCGCGACGACGAATCCCGATCAATCGATTTATCCCACGTCGAGGAATGTGGAACTACAATCGCCCTCCACggccgtcgccgccgccgcatcatcatcatcaacggtGGCTGGAGCATCCAATGGACGCTATCCGATAATTGTGTCTGGggcgcaacaacaacaacaacagattgTAGCAACGTCTCCAGGCGCTTCAACATCGACTACTTCACTGCAGCAACACTTTCATCACATGCAAcaattgcaacagcaacagcagcagcaacttcatcatcatcaccatcagcaacaacagcagcagcagcaacatcaacaacaacatcaccaTCAACAGAATCAACATTTTGAGCTGTCGAAAATCATGGCCATAAATTCGGGTGCGCTGTCGCGATTGGAGCTACCTCCAACACTGGGGAATCATCCTGTATCTAGTGCGATTACAGAGAATGTCTTGAGTCTGATTGGGATGTCGTCGAGCAGTGGCAGTGGCAACAGGTCCGGTGACGGCATGAAGATTCCAGACGAGGAAAAGCTGCGAAAAGTTCAGGCTGTCGTCGAATCGGGCATTGGTGATCATGCCAAGCAACAAATCTTACTAATCCTGGATAAAATTTCCACACTGAAGCCAGTCGAGCGATTACTTTTGTACCTTCGTATGCCAGGAGAAACACCAGAATCAGATCCTCTAAGGCAGCCACAGAATCCACTAGGAACTCGATCTGAAATCAATCACACAATTAATTGGGTTCGTTCACATTTGGAGCATGATCCAAAGGTTTCCATTCCAAAGCAAGACGTTTACAATGATTATCTAGCATACTGTGAGCGTTTGGATATAAAACCCCTATCAACGGCAGATTTTGGTAAGGTTATGAAGCAAGTGTTCCCAGAAATTCGTCCTAGACGTTTGGGAACACGTGGTCATTCCCGTTATTGTTATGCTGCGatgagaaaaacaacaaagttaaCTCCACCGCAGTTACCAATGCTCGCTGGACGTACCATAGACACCGTGAGCACTGATATTGAGTGTAACACGGATACAGAATCATGGAATACGGTTCGCACTTGGGCCGAAGGACTGCTTAGtactaaatttgaaaatatgaaagATTTAGCTGAACATATTGTTAAAAACGAATATACAGGTAGTGGAGCAGGCAGTTCACGAGTTTTACTGCAAAAGAAATTATTGCAAAGGGATGCAAAGGAGAAGAGAGTTTATGCTGACACGGGACCACTTAAGAAGCGGCGAAAGAAAAAACGTAAAGGTTCTACTTCATCTGAATCGAGTACAACACAAAATGCATCATCAGTGGGTTCAGTTAACGAACCATCGCGATGCAGCGATGACGTTTTGCTTGGTTCGGTTACAATCAAACAAGAAATTCTAGATTCACCAAATTCGCAGCAACCCATGCCACCGGTAATGTCGCTTATGAATTTGCACCATCCGTCTGGCACATATGACAACCAGATGCACGGCCATCAGCTGCTGCCAATGAATTTAGCGACAGAAAATGAACGCAGCAAGGGCTTGCCCATTAACAGTCCCGTGGCTAAAAATCTTACTAAAGCAATCGCAGACCTACCACCGTCTGTGAGTCTGTTGCCAATCGATTCACAAACAGTACAATTAGCATCAGTCAAAGAGGAGATTATCAACGATGAATATAATCCACAAAACGTGATATGCAAGAAGGTACGAAGAGCCCACCTTGCAAAGGGAATTTTACCAACGCCTTCCTCCTCAACAACAATAACGGCTGCTGCAGTTGAATCACAACCACCGCCTGTGGCTCCGGTTGAGCTACCATCAGCGGCTGTTAGTAACTACTCTATGGGACCACCAGCGCAGATCACCACCACTGCGATGGAATCTGCGAAATTAGCCAGCGTTCGTGCTAGAAAAATGCGACTTTTACAAGCTGAAATCTATCAATCATTCGATtcgcaacaacagcaacaacaaccatCTCCCCTGGTGGACAATGTCGAAATAACAGAAGACAAAGATGTAGTGCTACCAGAAAATCTTGGTTTACCACGTGAGCGGGTAATTAGTATTTGTAACATGGACAAGCATGAGCTAGATGATTATTTAAATGCAAACGATGAAGAGAACTCCCAGGATCAAGAAGCGGAATTGCTTCAATATTTTCAGACGGGAGACGctgagaacaacaacaacaatgctaACAACAAAGCAACACAACAGCAGCTGCAACAACAgcttcaacagcaacagcagcaacaaaatATAGATGCGCATAACCCAACGTTGGCAGGAATCAACCAAACAAATTCGGCATTTGAAGtaccaaataaaaagaaatcaattggTACAACTGGCAGCTCTTGTTTCACAAGAGATCGTGAAGACATCACACAGCTACGCCATTATCTTCATCAGAACTTTAATAAAGATTCTAATGAGTCGATGGGAGCATTAGCCGTAGCTACAGCCGTCAATCAGAGAGGAAATTTCCAAGGACAGAAATTTCCATCGAATGGAAACCATTACAATATGCCGGGCATCTACAACGAAGGGTCTGCCTCAGCGTCTCTAGCAATCATGTCTCAAAAGCATCTAAACGATACAGCATCACCATCGATAGCGGGTGCTGCTGCCACTGCCGCAGCAAcatcaataacaacaacaacttcgGCTACATCCGGCGTAATCGCCCCATCAACAGTTGATCACTCGATTATACCAATCGATGATTATACACTTGTTCCAAATAATGTGCGCGCcacccaaaaaagaaaaatcaatctaAACGCAATGGTACCTGCTCCTAGTACAACGCAACGGCGAAAGAACTGCACTTTCTTTCCAATTTCGCCAAATATAAATCTTAATAATATCACAACAAACAGCACCTCGTCTGTATCCTGCACCGCTTCTATGTCAACAACAACCAATTCAAATCTATTCGCTAGTCCTAGGCTAACCACATCGGTGCGCTCTAAACCATTACTGCATAAGCAGCAATCATTACCGGACAAGAATATCGTCATCCCGTCCATCATCAACGATCCAATGATTGGAGCTAGTCGCAACAATAGAAATTATAACACAATGGCATCAGCATCGGCGCCACCTAGTCCTTCGATATTACAGGACACGATGATGTTTGGTAGTAAAAGTTATAATACCAACGCAAGCACTGGCAATCCTATGGGAGGATATAATATACTTCAGGATTATCAACAGAGTTTTACCAATTCGTGTGGTACTAGCAAAATGTTAACAAACGATCAAAACTCCCTGGAGTGTGTCCTAGATGAGCCACCACCGCATTTGTTGGCTGAATCGCGTTCACGTAGTGTTCCGCTACAATATCGCAACAGTCCTGCCTTTAATCAAACCGCAAACTATGCTGGATTCTCGTCCACTTGCAGTTCAGCTGCCCAGACACCGGTGCCGCCTCAATTTGCTGACTTTAGTGATCCATCATCTATTTTGGATATTTTCAGTGATGCCAGTCAAACGCACGGTACCTCAATAAAAATGGAAGAATCCACAAGCAGCTTACTATCCAGCTCAGTTGCTGACATTCTACAACCAGAGTATAATCGTATGCCGAATAATTTCGGTGGTATAGTTTCGCGTTCAGTGCCATCTACACCATTGCCGCTACATAATATGATTGATCCATTCCTAGGCAGCAAgaaacaccaacaacagcagcaggacACATTTCCCAGTGCACAGAGTAAATATTCAACGAAAATGTATGATATTTCTAAATCAATGCCTACGACACCGATAACGTCGAATACGGCAACGCCATCATTCCGTTATAGCCCGGAATTCAATCGAGATTTTCTAATAAACGGTAATACAGTGGAAAGTACGCCAGCTTATAGCCGAGCGCCATCTGTTGCCGCTGCTGCAGCACCTAGTCTATCCGATTCGTTGCTTGACGATGCCCGAGAAGGCGGATCAAATTCGCTCACCGACGGCATAGATGACCTAAGCAGTTTTGGTGAGGTTTCCGAGTCAATTATTGAGGCCGACATATTGAATATGAATAATCTTTGA
- Protein Sequence
- MSDKNVHQQMQWKQKNPSTTATTNPDQSIYPTSRNVELQSPSTAVAAAASSSSTVAGASNGRYPIIVSGAQQQQQQIVATSPGASTSTTSLQQHFHHMQQLQQQQQQQLHHHHHQQQQQQQQHQQQHHHQQNQHFELSKIMAINSGALSRLELPPTLGNHPVSSAITENVLSLIGMSSSSGSGNRSGDGMKIPDEEKLRKVQAVVESGIGDHAKQQILLILDKISTLKPVERLLLYLRMPGETPESDPLRQPQNPLGTRSEINHTINWVRSHLEHDPKVSIPKQDVYNDYLAYCERLDIKPLSTADFGKVMKQVFPEIRPRRLGTRGHSRYCYAAMRKTTKLTPPQLPMLAGRTIDTVSTDIECNTDTESWNTVRTWAEGLLSTKFENMKDLAEHIVKNEYTGSGAGSSRVLLQKKLLQRDAKEKRVYADTGPLKKRRKKKRKGSTSSESSTTQNASSVGSVNEPSRCSDDVLLGSVTIKQEILDSPNSQQPMPPVMSLMNLHHPSGTYDNQMHGHQLLPMNLATENERSKGLPINSPVAKNLTKAIADLPPSVSLLPIDSQTVQLASVKEEIINDEYNPQNVICKKVRRAHLAKGILPTPSSSTTITAAAVESQPPPVAPVELPSAAVSNYSMGPPAQITTTAMESAKLASVRARKMRLLQAEIYQSFDSQQQQQQPSPLVDNVEITEDKDVVLPENLGLPRERVISICNMDKHELDDYLNANDEENSQDQEAELLQYFQTGDAENNNNNANNKATQQQLQQQLQQQQQQQNIDAHNPTLAGINQTNSAFEVPNKKKSIGTTGSSCFTRDREDITQLRHYLHQNFNKDSNESMGALAVATAVNQRGNFQGQKFPSNGNHYNMPGIYNEGSASASLAIMSQKHLNDTASPSIAGAAATAAATSITTTTSATSGVIAPSTVDHSIIPIDDYTLVPNNVRATQKRKINLNAMVPAPSTTQRRKNCTFFPISPNINLNNITTNSTSSVSCTASMSTTTNSNLFASPRLTTSVRSKPLLHKQQSLPDKNIVIPSIINDPMIGASRNNRNYNTMASASAPPSPSILQDTMMFGSKSYNTNASTGNPMGGYNILQDYQQSFTNSCGTSKMLTNDQNSLECVLDEPPPHLLAESRSRSVPLQYRNSPAFNQTANYAGFSSTCSSAAQTPVPPQFADFSDPSSILDIFSDASQTHGTSIKMEESTSSLLSSSVADILQPEYNRMPNNFGGIVSRSVPSTPLPLHNMIDPFLGSKKHQQQQQDTFPSAQSKYSTKMYDISKSMPTTPITSNTATPSFRYSPEFNRDFLINGNTVESTPAYSRAPSVAAAAAPSLSDSLLDDAREGGSNSLTDGIDDLSSFGEVSESIIEADILNMNNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01541170;
- 90% Identity
- -
- 80% Identity
- -