Xvio009340.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xylocopa violacea
Gene Symbol
egg
Assembly
GCA_963969225.1
Location
CAXAJV010000013.1:20287012-20291508[+]

Transcription Factor Domain

TF Family
MBD
Domain
MBD domain
PFAM
PF01429
TF Group
Unclassified Structure
Description
The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1e-13 3.5e-10 39.5 0.1 5 70 618 677 615 682 0.88

Sequence Information

Coding Sequence
ATGGAAGTTATTGAACTGGTATCAGATGATGAAGTGTTTGAGGATAATATAAAAGAAACTAGAGGTTCTAAAACTTGTAACATTAATTGTATAAATTTTCAATGTTCTTCCGGACTGGATATGAAATTGGCACCTTCCTTTGCATGCGCTTTTTATGGAGTAAAcatggaaaaaaagaaaaagcgtATGATATGTAAAAAGTGCTTCAATGCTGCATTAGAACATCAAAAgCAACTAATTACAGCTTTTGTGGATCATAAACCATTATTAGAATGTGAATTTCCAGATCACACAAATGAAGTAGAGATTTCTGACAGTGATGAGTCAGATGATGACAAAAAAAAGGATACATATAATGATGAAGAGTATTTACCAGAAGAATTTCTTGCTGACATGGAAGAAATGTTAGACAGTACATTAAGTGATATTTTTAAGAAGTATGATGTAGATTATCAAATTAAGCAAGCCCACAATATTCTTAAAGATGAGTGGAATAAAATAGATGaACAGAATGAAGAATTGGATAAAACAGTCAAAAGTTTAATGAGTACTATGGACACATTACGTAATAGTTTATATGATGAATTCAGACCACAAATTCGGATGCTTCAAGAGCTTCAAATAGATGATGAATATGTAGATAATGGTTTCTATCCATTAGTTGCAACAAAAAAAGTTACACAAGTAAGGGTTGCTCCCTCTTCAATGGTACAGGATAGTCAACCAGAAATTTTACCAATTGAACAGGATAATAAACAACTTGTCGTTTTGGATTTACCTCCGATTGGTGCACTTGTAAAAGCTCAAATAGACGTGGATAGCATTGTATATATTATGAAGCATCCACTTATGCCATGGATTAAAGGAAAGGTGCAAACTGTACTCTCAAAAATTCCTTTACACTGTCGAGTGAAATTATTACAAAAGAAATATAATTCCGTTATCAAATCCGTTTCCGGCAAGCAAATTGCAGCTACAGTAGTTAGTCAAGTAATAATTCCAGTTGGGACACGAGTAGTTGCAATATTTAAAGACGTTACATCTAGCAATTTTTATAGCGGGGTTATAGCTGAACCTCCAAAAGCCACGAACAAATATAGATATTTGGTATTCTTTGACGATGGATACGCCCAGTACGTCGAGCACAAATATATTTATTTAGTTGCAGAATCTTCCACCAAAGTTTGGGAAGATATACCTAATGAAtctcgtgattttgtaaaaaaatacatTGAAACATATCCTGAGAGACCAATGGTTAAATTACAAAGGGGACAAGTAGTGAGGACAGAATGGAATGGCAAATGGTGGATCGCAAGAGTAGTTCAAGTCGACGCAAGTTTAGTACAAATGCATTTCGATGCTGATGGAAGAACAGAATGGATTTATAGAGGTTCTGCTAGATTAGGGCCTTTATATTTCGAACTCTTGAAGGCTACTGCTAGACAATTAGGACATCATACATCTGTTAATACGCCGAGTAGACATCGACTACCTGTTGTCTCCAATaaaagtaACTTACCCTATGTAGAATATACATGCAATATAGAGTCTGAAGAAGAAAGAATCTCTCAGATAGAAAAAGAACAGAGTACAGTAAGCGAAGCTACAGGTACATTTACATCAAGTGCACCGCAGCAATCACGCGCTGTTGCTAGGAAAAGTACTAGTAAAAAACAAAATATCGTGGACTCGAGTATTTATAATCCTACTACAGAAACAAAGCCTTCTCATAGCATAGTCTATTATCAAACACAAAACAAGATTCAAACAAAAAAATTCGTTCCACATAAGTGCGGACCGCAATGTGTTCAAGGAATATCGTTCACACCCGATGATTTAAGAGGATATTCGCCTCTTTCAATACCATTACTTTGTGGCTGGAATAGACAACTTTGTAAATATCCGAAAGGCAAAAAAATTACATTATACCAAGCTCCTTGTGGTGTCAGATTACGAAATATGGAAGAACTGCATCAGTATCTTCGCAAAACAGGTAGCCCAATGTCGGTTGATTTGTTCGACTTTGATTATTGGGTACATTCTTTAGCAGAATTTGTCTTGGACAAATGTTTTATAAATATAAAGGATCTCAGTTATGGTGTAGAGAACGTaccaataccatgcgtcaatgAATTAGATCACACACAACCGGATACTATTAGATATAGCACTCAAAGAGAGCCAACAGAAGGAGTCAATCTTAATTTAGATCCAAATTTCCTGTGTAGCTGTGACTGTGAAGATGAttgtcaaGATAAAACAAAGTGTCAATGTTGGCAATTAACGATACAAGGTGCTACCCTCGGAGGAAGAGTACCCAATACGTCTGTCGGTTACGTGTACAAACGTTTACCAGAACCAGTTACCACTGGAATATACGAATGCAATTCCGGCTGTAAATGTGCTGTAAAAACTTGTTTAAATAGGGTAGTACAACATCCGCTAACATTGAAATTACAAGTGTTTAAAACAGCTCCTCGAGGCTGGGGTATACGATGTTTAAACGATATTCCTCTTGGATCTTTTATTTGTATATATGCTGGTAGATTGCTTACGGAACAGGGAGCTAATGAAGGTGGTAAAAATTACGGAGACGAATATCTTGCAGAGTTAGACTACGTGGAAGTGGTAGAAGGTATCAAAGAAGGTTATGAAAGTGATGTTCTTGAGCCAGAAATGCCATTATCTACACCAGAAGATAAAAGGAAATCTATAACGAGTGAAGATGAGGATAATTCAAAAACGAACACAAACGATTCAGATGAAGATTTCAACATTAGTAAATATGTAAATTTTAACGTAGATTGCACAGAACCTTCCTCAATTAGAAAAAGACTAAGAAAACGAAAACGGGATGATACTAATCAAGATGGATCTGAAGAAAATAGTGAAGATGGAAGCGTTGTTAAAACTTCCGAAAATGTTACAAGACCCTCGAATAACGATAATCGTTCAAATGATCAAGATGCAATTACTATTAGCGATGAAGAAGAAAATAGAAGTGGTAGACGTGAACCAAGTAGATTTGAACCAACAGTAGAACCAACGCAGATCGAAGGACCTAAATTTAAATCAGTAAGAGATTTCTTTGGAGAAGACGAAGCTGTTTACATAATGGATGCTAAAACAACTGGAAATATCGGACGCTATTTAAACcattcgtgcgaTCCAAATGTTTTTGTGCAAAATGTATTTGTTGATACACATGATGTAAGATTTCCATGGGTGGCATTCTTTGCCTTAAATTATATCAGAGCTGGCCAGGAATTAACATGGAATTATAGTTATGATGTTGGAAGCATACCAGGTAAAGTTATTATATGTAAATGTGGTGCGTCTAACTGTAGGGGTAGACTTTTATAA
Protein Sequence
MEVIELVSDDEVFEDNIKETRGSKTCNINCINFQCSSGLDMKLAPSFACAFYGVNMEKKKKRMICKKCFNAALEHQKQLITAFVDHKPLLECEFPDHTNEVEISDSDESDDDKKKDTYNDEEYLPEEFLADMEEMLDSTLSDIFKKYDVDYQIKQAHNILKDEWNKIDEQNEELDKTVKSLMSTMDTLRNSLYDEFRPQIRMLQELQIDDEYVDNGFYPLVATKKVTQVRVAPSSMVQDSQPEILPIEQDNKQLVVLDLPPIGALVKAQIDVDSIVYIMKHPLMPWIKGKVQTVLSKIPLHCRVKLLQKKYNSVIKSVSGKQIAATVVSQVIIPVGTRVVAIFKDVTSSNFYSGVIAEPPKATNKYRYLVFFDDGYAQYVEHKYIYLVAESSTKVWEDIPNESRDFVKKYIETYPERPMVKLQRGQVVRTEWNGKWWIARVVQVDASLVQMHFDADGRTEWIYRGSARLGPLYFELLKATARQLGHHTSVNTPSRHRLPVVSNKSNLPYVEYTCNIESEEERISQIEKEQSTVSEATGTFTSSAPQQSRAVARKSTSKKQNIVDSSIYNPTTETKPSHSIVYYQTQNKIQTKKFVPHKCGPQCVQGISFTPDDLRGYSPLSIPLLCGWNRQLCKYPKGKKITLYQAPCGVRLRNMEELHQYLRKTGSPMSVDLFDFDYWVHSLAEFVLDKCFINIKDLSYGVENVPIPCVNELDHTQPDTIRYSTQREPTEGVNLNLDPNFLCSCDCEDDCQDKTKCQCWQLTIQGATLGGRVPNTSVGYVYKRLPEPVTTGIYECNSGCKCAVKTCLNRVVQHPLTLKLQVFKTAPRGWGIRCLNDIPLGSFICIYAGRLLTEQGANEGGKNYGDEYLAELDYVEVVEGIKEGYESDVLEPEMPLSTPEDKRKSITSEDEDNSKTNTNDSDEDFNISKYVNFNVDCTEPSSIRKRLRKRKRDDTNQDGSEENSEDGSVVKTSENVTRPSNNDNRSNDQDAITISDEEENRSGRREPSRFEPTVEPTQIEGPKFKSVRDFFGEDEAVYIMDAKTTGNIGRYLNHSCDPNVFVQNVFVDTHDVRFPWVAFFALNYIRAGQELTWNYSYDVGSIPGKVIICKCGASNCRGRLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00684169;
90% Identity
iTF_00684789;
80% Identity
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