Xvio002895.1
Basic Information
- Insect
- Xylocopa violacea
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_963969225.1
- Location
- CAXAJV010000004.1:38972706-38975054[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.2e-115 8.5e-111 370.2 35.2 1 300 29 327 29 327 0.97 2 3 0.0024 48 3.2 2.9 122 172 327 377 325 382 0.92 3 3 0.071 1.4e+03 -1.6 6.0 195 238 359 401 347 402 0.57
Sequence Information
- Coding Sequence
- ATGGAGTCCGCTGTAGCTGGACGTAGGCGGACAACCACGCGACATTCGGCAGAAGATCAGGCTCTCGATCAGATAGCCAAAGAGGCAGAAGCTAGACTAGCCGCCAGAAGACAGGCAAGAGCGGAAGCAAGAGAGATACGGATGCGGGAGTTAGAAAGGCAACAGAAAGAGGCAGAGGAGAATGCGGATAGGGTGTACGACATGTGTTCAGCCGATGTGAATAGAACAATGAGAGTAACGCCCGATTCCGTGAGGGCGTCTCGCCTCCTCACGAATTCTAATAACTTCCAGTCCAGTCGTAGATCGTCTGAAGATTCGTTAGAAGATGCTGGCCTAAGCAGAGATCTCAGGTTAGAATTGAAAGAGTTCGAAGAGAAGTTCAGAAAAGCGATGATAGCAAACGCTCAGTTAGACAATGAAAAGTCGTCGTATGCTTATCAGGTCGATTTGTTGAAAGACAAGTTGGAGGAACTGGAGGAGACAGTTGCACAACTGCGTAGAGAGCTTAGGGAAAAAAATCGGGAATCCGATCAATTGAAAAGACTCAGTCAAAGATTGAAAGACGAATTAGAAGTATGCAATGCACAACTAGTAGAGAGAGATACGCTTATACAAGAAAATGGTTTAGTTATTATCGATGATGAAGGAAGCGAAAATGAAGATAACGATATCGAAAACGGCCCACgtccgagacgtagagtactaGTCAGTACAGAAGCAGCGGAATTATTACAAAATGCTGGAAAGGGTTCGCTAGATGTCCGACTGAGaaaatttgcttctgaaaaaAAGGAATTGCAAGATGAAATAAGACATCTAAGATTAGAATTGGAAGAAACGAGAAATCGGATTAGGTCCGAAAGATCGCCTGGTTCAGTATTAGGTTATTTATCAGACTCCGAAGACGTGCAACGAGAAGCAAATAAACTTCTGGCCGACTACAAGTTTAAGCTTCAAAAAGCTGAACAGGACATGTCCACTTTGCAAGCCACGGTAGCTAGGCTAGAAAGTCAAGTAATACGTTACAAGTCGGCAGCGGAGGCGTCCGAGAAGGCAGAGGATGAGTTAAAAGTCGAAAAGAGAAAATTACAAAGAGAAGTGAGGGAGACACAAGGTCGCGTTGAAGAATTGGAAACGGCAAATTCTCATTTACAGAGGCGATTGGATAAACTTAAAAACGCGAAATCCGCTCTGTTGAAGGAGCTTTGA
- Protein Sequence
- MESAVAGRRRTTTRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDMCSADVNRTMRVTPDSVRASRLLTNSNNFQSSRRSSEDSLEDAGLSRDLRLELKEFEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEELEETVAQLRRELREKNRESDQLKRLSQRLKDELEVCNAQLVERDTLIQENGLVIIDDEGSENEDNDIENGPRPRRRVLVSTEAAELLQNAGKGSLDVRLRKFASEKKELQDEIRHLRLELEETRNRIRSERSPGSVLGYLSDSEDVQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRETQGRVEELETANSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_00633626;
- 80% Identity
- -