Basic Information

Insect: Xylocopa violacea
Gene Symbol: -
Assembly: GCA_963969225.1
Location: CAXAJV010000002.1:33940817-33944138[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 7.8e-13 1.2e-09 37.9 0.0 1 39 301 340 301 344 0.90

2 4 2.4e-12 3.7e-09 36.3 0.1 2 39 356 393 355 396 0.94

3 4 8.7e-19 1.4e-15 56.9 0.0 2 45 411 455 410 455 0.97

4 4 9.9e-19 1.5e-15 56.7 0.1 1 42 462 504 462 505 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	7.8e-13	1.2e-09	37.9	0.0	1	39	301	340	301	344	0.90
2	4	2.4e-12	3.7e-09	36.3	0.1	2	39	356	393	355	396	0.94
3	4	8.7e-19	1.4e-15	56.9	0.0	2	45	411	455	410	455	0.97
4	4	9.9e-19	1.5e-15	56.7	0.1	1	42	462	504	462	505	0.97

Sequence Information

Coding Sequence: ATGAAACCGTATCCGTTAAAGCGACCCTCATTGTTGAAAACAGCCGATCAGCTGAAGATCAAAGGGCTCTGCGAAGTGCCGGAAACCAAAGATGGTCCACCCTCGGTAAGCCTAAGTTCACCGCCGAGAGAACCCGGCACTCCGAGGATAAATTTCACGAAGCTAAAAAGGCATCATCCACGATACAAGAGACCCAGAACCACGTTCGAGCCTCGTGCCACGGATTCGAGACACTACGACCGATACAAAGAAGAAGAATCGAACGAGAATTATAATCGGGAGAACAAAGAGAACCACAGAGACTGGCAAGCCGAAGATGAGGAGTGTACAGAGGCAACCACGGGAGCAGTAGTCTTGGAAACTTGCCAGCGCAACAGTATCGGTAGCATTatcagcaacaacaacaacaacaacaacaataataaCACTAGCGGCAATAGCAACGGTAACAGTACGAACAACAACAATAACAACGGTGACATGTTTTGTCATACAGGTCTCGGTCATTACGGTCATCATCCGGATCCCGGAGAAGTCGATCTACCTCCAGAGACACAACCTACACCACCTAGTGCAACGTTGGTCGGCACAACCATTACCCATTTGAGGGATCCAGATCATCACTCGACAGAGATACAGAATTGCGACAGTGTGAAGATCAAGTTCGAAACGTTACACACGATGGATTCGTCGGACACGATCGATATCGACAGCCATATGTCAGATCGGGCGAGCGTTAGTTCGAAGAATGCGGCCGACAGCGACAACATGATGATGATCACGCCAGAGTTGCTTGGATTAATGCCATCTGGGAGTTCGGTTCACTCGGATTCCGGCGAAAATAATTCAAGAGGTCACACCGGACAATCCAGTTCACACCATCACGGTTCGAAATCGTGGACCCAAGAGGATATGGACGCCGCATTGGAAGCGTTGCGGAATCACGATATGAGCCTCACGAAAGCATCTGCAACGTTCGGTATACCCTCCACGACGCTGTGGCAAAGGGCGCATCGGCTCGGCATCGACACACCAAAAAAGGACGGGCCAACCAAATCGTGGAGCGACGAGAGTTTAAACAACGCGCTCGAAGCCCTGCGGACTGGGACAATATCGGCGAATAAAGCGTCGAAGGCGTTCGGCATACCATCCAGCACCTTGTATAAAATCGCGAGGAGGGAAGGAATCAGACTCGCCGCCCCTTTCAACGCGAGTCCCACCACTTGGTCACCTGCCGATCTCGATCGAGCCCTCGAAGCGATACGTTCCGGGCAAACGTCCGTGCAAAGGGCCTCCACCGAATTCGGTATACCAACCGGAACGTTGTACGGCCGATGTAAACGAGAAGGAATCGAACTGAGCAGAAGTAATCCAACACCGTGGAGCGAAGATGCAATGACCGAAGCTCTCGAAGCTGTCAGATTAGGCCACATGAGCATCAATCAAGCGGCTATCCATTATAACTTACCGTACTCTTCTCTGTACGGCCGCTTCAAGAGAGGCAAATACGAAGAGCCAGCTGTCGGCGACATGTCGCAAGACGGTACCAATCCTCATTTCCATCAAAGTCCAACACAGAATCATTCGTCCGCCGTCGTACCGGATCAAATGCCGTACCAGGGCAGCTGA
Protein Sequence: MKPYPLKRPSLLKTADQLKIKGLCEVPETKDGPPSVSLSSPPREPGTPRINFTKLKRHHPRYKRPRTTFEPRATDSRHYDRYKEEESNENYNRENKENHRDWQAEDEECTEATTGAVVLETCQRNSIGSIISNNNNNNNNNNTSGNSNGNSTNNNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSVHSDSGENNSRGHTGQSSSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPAVGDMSQDGTNPHFHQSPTQNHSSAVVPDQMPYQGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00141914;
90% Identity: iTF_00306165;
80% Identity: -