Xare013266.1
Basic Information
- Insect
- Xylocampa areola
- Gene Symbol
- -
- Assembly
- GCA_935412865.1
- Location
- CAKXYQ010000459.1:69017-71599[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.8e-08 1.5e-05 25.1 0.0 2 35 16 49 15 53 0.92
Sequence Information
- Coding Sequence
- ATGCCGAAGGTTACGGTTGGAAAAAAATATTCAAAAGCATATATAGAAGAAGATGTAGAAAAAGCCTTGCAAGCCATAAAAAACGGAATGGGTAAGAAAACTGCTGCAAATAAATTTAATATCCCACGGGCAACTTTGCAGTTTCGCCTATCCAATTTATTTGTTAAAAGTCGACCTGGTCCAAATACAGTTCTGACTGATGCAGAAGAAAAAGAGATAGTTAAGTGGATAATTTCAGCTTGTAGAAAAGGATTTCCACGGCGTAAAGAGGATGTCATAAAGAGTGTCAAACTGTATTTGGACGAACATCCGAGACCAAATAGTTTTATAGATAATTCACCAGGCGATGGATGGTATAAATTATTTTTGAAGAGGCATCCTGAGCTTTCTATACGAACATCAGAGGCTGTAACTTCAGCAAGCTCAAAGTTGTCAGAGAACCAAATTAGAAATTGGTTTAAACAAGTAGAAGAATATCTGAAAGAAAATGATCTTTttaatattttgagtgatccatctagagtttacaatggggatgaaactaattttatattatgcccaaagaatactaaagttatcgctttaaggggaaccaaaaatgtgtatgaggtagatcatgctcagtctaaatcatgtgttaccgtaatgtttacattttcggcggatggtgtaacaacacctcctatgattatttatcccttaaagagaatgcgacttgagattcaaaagtctgtgcctagcgagtggggcattggcttgtcagataatggatggatgaaggccgaacttttcatccagtacatacagaatgttctgcatccagcgctaatgaagagtaatgtcacatttccagtaattctttttttggatgggcataaaagccacacaacacttcagcttactcaactttgtcaaaatcttggtataatacttaaagctctataccctaacgcgacacggattttgcaaccagcagacgtagcggcgtttcgcccaataaaagtaatgtggcgtaaagcagtcctagaatggcgtacagataacttaacgaaatccttactaaaaacagatgttgctcctATATTGGAGAAGCTTTTACCTAAATTAAACAAGACGACGTTAAAGAACGGTTTTGAAGCTTGTGGTTTATGCCCATTTAATCCAGATCAAGTAGACTATACAAAATGTTTAATGCCCTCTAAACCAGTACAAGAAATTTTGGATGACAACTGTTCTACAAGTCTTAACTATCAGACATTTGAAGAAATTGTTGGACCACAGCTAGTCCGAAAGATGAAGAATCAGATGGTAGGTAAATCAATAGAAGCTAAAAAGCTTTATGACTTGTATAAATATCTCGTACCAAAAATTTCAATACAAGAGCCATTGTCGCAAATAATAGAAACAACTTCTATGGAACTAATACAACACAAGGACAGGAGCAATTTAAATGAACAAAACAACGATGGTTCAGAAGATTTGAACACAATGGCAGCCTTTAATGAATTAACGACAATGCCAACAGAAGTAGAACTTTTGCTAAATGAACCAGAACTGTCCCATGAACCTCAATCCGAAGACATTGGCATTTCTAAAGCAAACACGATGGTTGTCGATTATTCAGAAACCTCAGGACACGAAATAGGCGAAGAGCATGTTGAACTTCAGCATCAGGTGGTTGAAAAATTACCTTTAGAATCCTGGAAAATCTGTTCATCAATAAACGATTCAGTACCAGAAGCTGCACAAACGGTTGAGATTATTTCCGAGTTTCAAAGAGAAAACCAGTCAATAACGCCAATAAATTTCATACCTATTCCATCCACCAGTCGTCAAAGTGTAGAGCTGATTGGTGGAAAATGGGCACTAGTGAATGATATGCCAATCAAAGTCCCTACAAAGGAACAAAATATAAAAGATTTTTTAAAGTTACCGAAGACTCCAATTAAAACACAAAAAGGTGGTACAGAACATCGCTCTTTTGTTTTGACTAGTAAAGATTGGGAAGCTATAGAACTAGAAAAACAACAAAAAAAGATGAAAGAGATACAAGAAAAGGAGAACAAACGAATAAAAAGACTAGAGAAAGCCAAAGAGAAACAATTACTCAAGGAAAAGAAACAAGCTGAAACTATAAATAAAAAGAACAAAGCCAAAAATTTTAAGTTAATTAAGAAAAGTAAACCAAACTCTGATAGTATTAAATCAAAAATTGTAATCCATTCAAACGTCTTGATTAAACCTGCAAATAAAATCTCAAGTGATATTGAAGAAGAAAGAGGATATACAAGGGAATTAAAAATAGAACCTATGATCGAAGTTAAACCTGCAAATATTACTATCCTAAAGGAAATACAAAACAGACCAATTTTAGATGCAGTTGAAGCTGAAAATGAAAGAAGCTTTAATGAATCGGAACAAGTACAAATGGTCAAAAAAGAATTAAAGAAAGGACCTATTTTAGATGAACCTGCAAATTTCAGAGATTCAAGGGAAACCAGAAAAGATAAGATAAAAGTTAAAGAAAATAGATTGAGACCAATGACAAATGAAGAACTATTAAAAGTATTAGAAAATGATTAG
- Protein Sequence
- MPKVTVGKKYSKAYIEEDVEKALQAIKNGMGKKTAANKFNIPRATLQFRLSNLFVKSRPGPNTVLTDAEEKEIVKWIISACRKGFPRRKEDVIKSVKLYLDEHPRPNSFIDNSPGDGWYKLFLKRHPELSIRTSEAVTSASSKLSENQIRNWFKQVEEYLKENDLFNILSDPSRVYNGDETNFILCPKNTKVIALRGTKNVYEVDHAQSKSCVTVMFTFSADGVTTPPMIIYPLKRMRLEIQKSVPSEWGIGLSDNGWMKAELFIQYIQNVLHPALMKSNVTFPVILFLDGHKSHTTLQLTQLCQNLGIILKALYPNATRILQPADVAAFRPIKVMWRKAVLEWRTDNLTKSLLKTDVAPILEKLLPKLNKTTLKNGFEACGLCPFNPDQVDYTKCLMPSKPVQEILDDNCSTSLNYQTFEEIVGPQLVRKMKNQMVGKSIEAKKLYDLYKYLVPKISIQEPLSQIIETTSMELIQHKDRSNLNEQNNDGSEDLNTMAAFNELTTMPTEVELLLNEPELSHEPQSEDIGISKANTMVVDYSETSGHEIGEEHVELQHQVVEKLPLESWKICSSINDSVPEAAQTVEIISEFQRENQSITPINFIPIPSTSRQSVELIGGKWALVNDMPIKVPTKEQNIKDFLKLPKTPIKTQKGGTEHRSFVLTSKDWEAIELEKQQKKMKEIQEKENKRIKRLEKAKEKQLLKEKKQAETINKKNKAKNFKLIKKSKPNSDSIKSKIVIHSNVLIKPANKISSDIEEERGYTRELKIEPMIEVKPANITILKEIQNRPILDAVEAENERSFNESEQVQMVKKELKKGPILDEPANFRDSRETRKDKIKVKENRLRPMTNEELLKVLEND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00702832;
- 90% Identity
- iTF_01264484; iTF_01264486; iTF_01264488; iTF_01264489; iTF_00373965; iTF_01152077; iTF_01119267; iTF_01119272; iTF_01425003; iTF_01425004; iTF_01260045; iTF_00049838; iTF_00373966; iTF_01152078; iTF_01260046; iTF_00373967; iTF_01152079; iTF_01152080; iTF_00037746; iTF_00171698; iTF_00952658; iTF_00037747; iTF_00745620; iTF_01117141; iTF_00373942;
- 80% Identity
- -