Xruf046373.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- -
- Assembly
- GCA_963966045.2
- Location
- OZ014503.1:23881820-23886430[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.6 4.1e+03 -0.5 0.3 26 43 71 88 66 103 0.86 2 12 0.5 8.1e+02 1.8 0.0 22 44 173 195 163 202 0.84 3 12 0.17 2.8e+02 3.3 0.2 22 44 201 223 196 227 0.87 4 12 0.046 75 5.1 0.1 21 44 228 251 224 257 0.87 5 12 0.043 69 5.2 0.1 21 44 256 279 253 284 0.89 6 12 0.11 1.8e+02 3.9 0.3 21 44 284 307 280 315 0.83 7 12 0.091 1.5e+02 4.2 0.1 22 44 313 335 309 343 0.87 8 12 0.67 1.1e+03 1.4 0.1 24 51 343 370 337 372 0.83 9 12 8.8e-05 0.14 13.8 0.2 22 44 369 391 360 395 0.89 10 12 0.046 74 5.1 0.2 21 44 396 419 393 423 0.91 11 12 0.0039 6.2 8.6 0.1 21 44 424 447 421 451 0.92 12 12 0.63 1e+03 1.5 0.1 21 44 452 475 449 482 0.85
Sequence Information
- Coding Sequence
- ATGTCTTTTTGCGACCTAGTTAAATCTGAATTAGAGAATGGTTGGGATGAAACGGATATTGAGGGAAAATTTATAGCTGACAAAGGAGAGTCATTCAGATCAGATTTTCATGTAGAAGACATTAAGGTAGAACCGTTTTCTGATATTAATAACGATGGAATTAAAAATGAACCAATAGGAGCTTTCGAGGAAAATGACTCGAACAAACTAAAATGTCCGGATTGTTCCAAGGTCTTCTGTACCAACAGTGGCTTAAAACGGCACGGGATGATACATACAGGCCATAGGCCTTACAGATGTGAAATATGCGATCAAGCATTTCTTAAAACTGAACCAGAAAATGATTGGAATGAACCTGAAATGGAGATTGAAGAAAAGTTTATAGTTGAAGAAGGATTTGACAGGCTGCCAAAAATGGAAAATGTCGAATCAGATTTTTGTGTACAGGACCAAAAGGCAAGAGCGTTTCCTGACATTAAAATAAAAAGTGAACCGTCAGAGAGTCTCGAAGGAGGAGAAAATAAGTTCAGATGTCCTGATTGTCCCCAAGTCTTGGCTTCCGCCAGAGGGTTAAAAGCCCACTCCACAATACATACCGGTGAAAAACGATACAAGTGCGAGATATGTGAAAAAGCATTCCGCCTGCCAGAAAATTTGAGGTGCCACGTGAAGGGCCATAGTAACGAAagaccccacaaatgtgaaatatgtcatAAAGGGTTCCGTCAGCTTGGACATCTAACAAGCCATATGGTATGTCACAAGGCCGACACACCTTATGTGtgtgaaatttgtaataaaGGGTTCCGTCTGGCGCATAATCTGAAAAGTCATATGATGTGCCACACGAAGGAACGACCCCACAAATGCGAAATATGTCATAAAGCGTTCCGTCGGCGCTCTCATCTAACGGGTCATATGATGTGGCACACAGACAAGAAACCTCACATGTGTGAAGTATGTAATAAAACGTTCACTCAACCTTCAGCTTTAAAGCGCCATATGTTATGCCACGAAGATGCGATGCCTTATAAATGCCAACTGTGTAATAAAGAATTCCGTCAGCTGTCGAGCCTAAAGAGTCACATGACCTGCCACTCGAACGATAAACCACATGAATGCGAGATATGTAATAAATCATTCCGTCAGTCCTTAAACCTAATGCGTCacatgatgtgccacacagacgaGAGGCCCCACAAATGCGAATTATGTAATAAGGCATTTCGTCAGCAGTCGACTCTAAAAGAGCATATTATGTGGCATACAAATGAGAGGCCCTTCAGTTGTGGAATATGTAATAAAGCGTTCTGTAAGTCCAAAGTTTTAAAGCGTCACATGACGTGCCACACAAACGAGAGACCCCACAAATGTGCAATATGTAATAAAGGATTCAATCACACCTCGACCCTAAAGAACCATATGGCATGCCACGTGGACGAGAAGtgttacaaatgtgaaatatgtgatAAAGCGTTCAGTCGTCCCGCAGCTCTAAAGGTTCACATGAAGCGTCACATGGACGAGAGTCCCCATAAATTGGAAATTTTGATGAATATGCAGTCGGATCAGAATTACTCCTTGAATTTATCGCCAGAATAA
- Protein Sequence
- MSFCDLVKSELENGWDETDIEGKFIADKGESFRSDFHVEDIKVEPFSDINNDGIKNEPIGAFEENDSNKLKCPDCSKVFCTNSGLKRHGMIHTGHRPYRCEICDQAFLKTEPENDWNEPEMEIEEKFIVEEGFDRLPKMENVESDFCVQDQKARAFPDIKIKSEPSESLEGGENKFRCPDCPQVLASARGLKAHSTIHTGEKRYKCEICEKAFRLPENLRCHVKGHSNERPHKCEICHKGFRQLGHLTSHMVCHKADTPYVCEICNKGFRLAHNLKSHMMCHTKERPHKCEICHKAFRRRSHLTGHMMWHTDKKPHMCEVCNKTFTQPSALKRHMLCHEDAMPYKCQLCNKEFRQLSSLKSHMTCHSNDKPHECEICNKSFRQSLNLMRHMMCHTDERPHKCELCNKAFRQQSTLKEHIMWHTNERPFSCGICNKAFCKSKVLKRHMTCHTNERPHKCAICNKGFNHTSTLKNHMACHVDEKCYKCEICDKAFSRPAALKVHMKRHMDESPHKLEILMNMQSDQNYSLNLSPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01536878;
- 90% Identity
- iTF_01536878;
- 80% Identity
- iTF_01536878;