Basic Information

Insect: Xestobium rufovillosum
Gene Symbol: -
Assembly: GCA_963966045.2
Location: OZ014503.1:23881820-23886430[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 2e-06 0.00016 23.4 1.3 2 23 71 92 70 92 0.96

2 14 1.3 1e+02 5.2 0.2 1 10 98 107 98 107 0.95

3 14 0.0024 0.19 13.8 0.0 1 23 176 198 176 198 0.96

4 14 0.00066 0.053 15.5 1.0 1 23 204 226 204 226 0.96

5 14 0.00065 0.052 15.5 6.1 1 20 232 251 232 254 0.96

6 14 0.00011 0.0092 17.9 2.9 1 21 260 280 260 282 0.95

7 14 5.3e-06 0.00042 22.1 5.9 1 23 288 310 288 310 0.97

8 14 5.6e-06 0.00045 22.0 3.3 1 21 316 336 316 338 0.94

9 14 0.00015 0.012 17.6 4.6 1 20 344 363 344 366 0.96

10 14 2.7e-05 0.0022 19.9 4.0 1 21 372 392 372 394 0.94

11 14 1.8e-06 0.00014 23.6 1.9 1 23 400 422 400 422 0.97

12 14 0.0058 0.47 12.5 5.8 1 20 428 447 428 450 0.95

13 14 0.0016 0.13 14.3 5.4 1 20 456 475 456 478 0.95

14 14 1.6e-08 1.3e-06 30.1 0.2 1 23 484 506 484 506 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	2e-06	0.00016	23.4	1.3	2	23	71	92	70	92	0.96
2	14	1.3	1e+02	5.2	0.2	1	10	98	107	98	107	0.95
3	14	0.0024	0.19	13.8	0.0	1	23	176	198	176	198	0.96
4	14	0.00066	0.053	15.5	1.0	1	23	204	226	204	226	0.96
5	14	0.00065	0.052	15.5	6.1	1	20	232	251	232	254	0.96
6	14	0.00011	0.0092	17.9	2.9	1	21	260	280	260	282	0.95
7	14	5.3e-06	0.00042	22.1	5.9	1	23	288	310	288	310	0.97
8	14	5.6e-06	0.00045	22.0	3.3	1	21	316	336	316	338	0.94
9	14	0.00015	0.012	17.6	4.6	1	20	344	363	344	366	0.96
10	14	2.7e-05	0.0022	19.9	4.0	1	21	372	392	372	394	0.94
11	14	1.8e-06	0.00014	23.6	1.9	1	23	400	422	400	422	0.97
12	14	0.0058	0.47	12.5	5.8	1	20	428	447	428	450	0.95
13	14	0.0016	0.13	14.3	5.4	1	20	456	475	456	478	0.95
14	14	1.6e-08	1.3e-06	30.1	0.2	1	23	484	506	484	506	0.99

Sequence Information

Coding Sequence: ATGTCTTTTTGCGACCTAGTTAAATCTGAATTAGAGAATGGTTGGGATGAAACGGATATTGAGGGAAAATTTATAGCTGACAAAGGAGAGTCATTCAGATCAGATTTTCATGTAGAAGACATTAAGGTAGAACCGTTTTCTGATATTAATAACGATGGAATTAAAAATGAACCAATAGGAGCTTTCGAGGAAAATGACTCGAACAAACTAAAATGTCCGGATTGTTCCAAGGTCTTCTGTACCAACAGTGGCTTAAAACGGCACGGGATGATACATACAGGCCATAGGCCTTACAGATGTGAAATATGCGATCAAGCATTTCTTAAAACTGAACCAGAAAATGATTGGAATGAACCTGAAATGGAGATTGAAGAAAAGTTTATAGTTGAAGAAGGATTTGACAGGCTGCCAAAAATGGAAAATGTCGAATCAGATTTTTGTGTACAGGACCAAAAGGCAAGAGCGTTTCCTGACATTAAAATAAAAAGTGAACCGTCAGAGAGTCTCGAAGGAGGAGAAAATAAGTTCAGATGTCCTGATTGTCCCCAAGTCTTGGCTTCCGCCAGAGGGTTAAAAGCCCACTCCACAATACATACCGGTGAAAAACGATACAAGTGCGAGATATGTGAAAAAGCATTCCGCCTGCCAGAAAATTTGAGGTGCCACGTGAAGGGCCATAGTAACGAAagaccccacaaatgtgaaatatgtcatAAAGGGTTCCGTCAGCTTGGACATCTAACAAGCCATATGGTATGTCACAAGGCCGACACACCTTATGTGtgtgaaatttgtaataaaGGGTTCCGTCTGGCGCATAATCTGAAAAGTCATATGATGTGCCACACGAAGGAACGACCCCACAAATGCGAAATATGTCATAAAGCGTTCCGTCGGCGCTCTCATCTAACGGGTCATATGATGTGGCACACAGACAAGAAACCTCACATGTGTGAAGTATGTAATAAAACGTTCACTCAACCTTCAGCTTTAAAGCGCCATATGTTATGCCACGAAGATGCGATGCCTTATAAATGCCAACTGTGTAATAAAGAATTCCGTCAGCTGTCGAGCCTAAAGAGTCACATGACCTGCCACTCGAACGATAAACCACATGAATGCGAGATATGTAATAAATCATTCCGTCAGTCCTTAAACCTAATGCGTCacatgatgtgccacacagacgaGAGGCCCCACAAATGCGAATTATGTAATAAGGCATTTCGTCAGCAGTCGACTCTAAAAGAGCATATTATGTGGCATACAAATGAGAGGCCCTTCAGTTGTGGAATATGTAATAAAGCGTTCTGTAAGTCCAAAGTTTTAAAGCGTCACATGACGTGCCACACAAACGAGAGACCCCACAAATGTGCAATATGTAATAAAGGATTCAATCACACCTCGACCCTAAAGAACCATATGGCATGCCACGTGGACGAGAAGtgttacaaatgtgaaatatgtgatAAAGCGTTCAGTCGTCCCGCAGCTCTAAAGGTTCACATGAAGCGTCACATGGACGAGAGTCCCCATAAATTGGAAATTTTGATGAATATGCAGTCGGATCAGAATTACTCCTTGAATTTATCGCCAGAATAA
Protein Sequence: MSFCDLVKSELENGWDETDIEGKFIADKGESFRSDFHVEDIKVEPFSDINNDGIKNEPIGAFEENDSNKLKCPDCSKVFCTNSGLKRHGMIHTGHRPYRCEICDQAFLKTEPENDWNEPEMEIEEKFIVEEGFDRLPKMENVESDFCVQDQKARAFPDIKIKSEPSESLEGGENKFRCPDCPQVLASARGLKAHSTIHTGEKRYKCEICEKAFRLPENLRCHVKGHSNERPHKCEICHKGFRQLGHLTSHMVCHKADTPYVCEICNKGFRLAHNLKSHMMCHTKERPHKCEICHKAFRRRSHLTGHMMWHTDKKPHMCEVCNKTFTQPSALKRHMLCHEDAMPYKCQLCNKEFRQLSSLKSHMTCHSNDKPHECEICNKSFRQSLNLMRHMMCHTDERPHKCELCNKAFRQQSTLKEHIMWHTNERPFSCGICNKAFCKSKVLKRHMTCHTNERPHKCAICNKGFNHTSTLKNHMACHVDEKCYKCEICDKAFSRPAALKVHMKRHMDESPHKLEILMNMQSDQNYSLNLSPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01537510;
90% Identity: iTF_01537510;
80% Identity: iTF_01537510;