Xruf043568.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- -
- Assembly
- GCA_963966045.2
- Location
- OZ014502.1:26751144-26752541[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.062 99 4.7 0.2 22 43 67 88 61 96 0.88 2 11 0.011 17 7.2 0.5 23 54 96 127 92 127 0.91 3 11 0.0014 2.3 10.0 0.7 23 47 124 148 120 154 0.88 4 11 0.75 1.2e+03 1.3 0.2 22 44 151 173 148 180 0.81 5 11 0.0049 7.9 8.3 0.0 22 44 179 201 175 207 0.86 6 11 0.0017 2.7 9.8 0.9 25 48 209 231 203 236 0.87 7 11 0.08 1.3e+02 4.4 0.6 25 46 237 258 229 264 0.83 8 11 0.024 39 6.0 0.1 20 44 260 284 257 288 0.90 9 11 3 4.9e+03 -0.7 0.0 24 43 292 311 289 320 0.84 10 11 0.22 3.5e+02 3.0 0.2 21 45 317 341 314 344 0.89 11 11 0.00074 1.2 10.9 1.0 17 46 341 370 335 377 0.89
Sequence Information
- Coding Sequence
- ATGGCTTCCGACGATCCACTTAAAATTGAATTAAGAGTAGAATTGTGTAAAATGGGAAGTGACTTACAAACATTGTCGGAGCGCGAGCCAGGATTTTGTAAAGGAGAAGACGACCCGAACAAATTTAAATGCCCCGATTGTCCAAAAATCTTTTGCCGCAACCAAAAGTTGAAACTGCATTCGATAATACATACTAACAAGAGACCGTACATATGTAAATTATGTAATAAGGCATTCCGTCAGTCCGCACATCTGAAGTTTCATGCGATGTGTCATTTGGACCAAAGACCCCACAAGtgcgaaatatgtaaaaaagcgttCCGCAGCCAGTCGCATCTAAAAAGTCACTTGATGTGCCACACGGACGCCAAGCCTCACGTATGTGAGATTTGTAAAAAAGTGTTCCGCCGCCTCCAAGTACTAAAACGCCATATGATGTTGCACACAGACGAGAGGCCTCACTTTTGTGAAATATGTCGAAAAGCGTTTCGTCTCAAAACACATCTAAACGATCACATATTGTGCCACACGAGCCAGAAGAActtcaaatgtgaaatttgcgaTAAAACGTTCCGGCAGTCAGCCGGTCTGAGGATGCACATGATGTACCACACGGAGGAGATTCACGAATGCGAAATTTGCAAAAAGGTGTTCCGTCACACGCAGCACCTAAAACGTCACATGCTGCGCCACAAGAACGACGGATCACATAAATGCAAAATATGCGATGAAACATTTCGCCAGCATTCAATTTTACGTGCTCACATGAAGTGCCACAAAAGCGATcgaccccacaaatgtgaaatatgcgaTAAGGCGTTCCGTCAACTCTCAAGCTTAAAGTTTCATGTGATGTGGCACGCGGGCATCACACCCTATAAATGTGATATATGTGAAAAGACGTTCCTTCAGCCCTCGGGTTTAAGAATTCACACGTTTTGCCACACCAAAGAGAAGCCCTACAAGTGCGAAGTATGTAATAAAGCGTTCAGCCAGAAGTCGGCTGTACGGAGTCACATGTCACGCCACACGGACGAAAGGCCTCACAAATGCGAgatatgtaaaaaagcattccgTCTGCCACAACTTCTAAAGCGTCATCTGAAGTGCCACTTGGCCGAGTGGCCGCACAAGTGCGAATTTTGCGGCAAACGTTCTCAGACCAAAAATCTGCTGGAGAGACACCGTCTGATTCACATCCGCCAGCTAGAAGAATCGGAAAGAGATCCTTTCCATGAAGGCAGACAAGCTACTGAAGGTAACACGAGTGATACAAGTGGACGTAATTCAGTCGCTATTGTATTGGAAGAAGCTATTAAAGTTGAGGAAACTGACGTTGGCGAGGATGTGAAGAAAGAAGACGATCCCGAAGTACACTTAAAATCCTATTTTGCTTAA
- Protein Sequence
- MASDDPLKIELRVELCKMGSDLQTLSEREPGFCKGEDDPNKFKCPDCPKIFCRNQKLKLHSIIHTNKRPYICKLCNKAFRQSAHLKFHAMCHLDQRPHKCEICKKAFRSQSHLKSHLMCHTDAKPHVCEICKKVFRRLQVLKRHMMLHTDERPHFCEICRKAFRLKTHLNDHILCHTSQKNFKCEICDKTFRQSAGLRMHMMYHTEEIHECEICKKVFRHTQHLKRHMLRHKNDGSHKCKICDETFRQHSILRAHMKCHKSDRPHKCEICDKAFRQLSSLKFHVMWHAGITPYKCDICEKTFLQPSGLRIHTFCHTKEKPYKCEVCNKAFSQKSAVRSHMSRHTDERPHKCEICKKAFRLPQLLKRHLKCHLAEWPHKCEFCGKRSQTKNLLERHRLIHIRQLEESERDPFHEGRQATEGNTSDTSGRNSVAIVLEEAIKVEETDVGEDVKKEDDPEVHLKSYFA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01536905;
- 90% Identity
- iTF_01536905;
- 80% Identity
- iTF_01536905;