Basic Information

Insect: Xestobium rufovillosum
Gene Symbol: -
Assembly: GCA_963966045.2
Location: OZ014502.1:26751144-26752541[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 3e-05 0.0024 19.7 2.0 1 23 42 64 42 64 0.96

2 13 0.0012 0.096 14.7 0.5 1 17 70 86 70 90 0.91

3 13 9.6e-05 0.0077 18.2 6.8 1 21 98 118 98 120 0.94

4 13 9.4e-06 0.00076 21.3 1.9 1 23 126 148 126 148 0.97

5 13 0.027 2.2 10.5 5.5 1 21 154 174 154 176 0.92

6 13 1.9e-07 1.5e-05 26.7 0.9 1 23 182 204 182 204 0.98

7 13 2.6e-05 0.0021 19.9 7.9 1 23 209 231 209 231 0.97

8 13 0.0044 0.36 12.9 6.1 1 21 237 257 237 259 0.95

9 13 0.00014 0.011 17.7 1.5 1 23 265 287 265 287 0.94

10 13 0.0013 0.1 14.6 0.2 1 20 293 312 293 313 0.96

11 13 6.5e-07 5.3e-05 25.0 1.0 1 23 321 343 321 343 0.99

12 13 0.0013 0.11 14.6 4.7 1 21 349 369 349 371 0.95

13 13 0.00096 0.077 15.0 3.1 1 23 377 399 377 399 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	3e-05	0.0024	19.7	2.0	1	23	42	64	42	64	0.96
2	13	0.0012	0.096	14.7	0.5	1	17	70	86	70	90	0.91
3	13	9.6e-05	0.0077	18.2	6.8	1	21	98	118	98	120	0.94
4	13	9.4e-06	0.00076	21.3	1.9	1	23	126	148	126	148	0.97
5	13	0.027	2.2	10.5	5.5	1	21	154	174	154	176	0.92
6	13	1.9e-07	1.5e-05	26.7	0.9	1	23	182	204	182	204	0.98
7	13	2.6e-05	0.0021	19.9	7.9	1	23	209	231	209	231	0.97
8	13	0.0044	0.36	12.9	6.1	1	21	237	257	237	259	0.95
9	13	0.00014	0.011	17.7	1.5	1	23	265	287	265	287	0.94
10	13	0.0013	0.1	14.6	0.2	1	20	293	312	293	313	0.96
11	13	6.5e-07	5.3e-05	25.0	1.0	1	23	321	343	321	343	0.99
12	13	0.0013	0.11	14.6	4.7	1	21	349	369	349	371	0.95
13	13	0.00096	0.077	15.0	3.1	1	23	377	399	377	399	0.97

Sequence Information

Coding Sequence: ATGGCTTCCGACGATCCACTTAAAATTGAATTAAGAGTAGAATTGTGTAAAATGGGAAGTGACTTACAAACATTGTCGGAGCGCGAGCCAGGATTTTGTAAAGGAGAAGACGACCCGAACAAATTTAAATGCCCCGATTGTCCAAAAATCTTTTGCCGCAACCAAAAGTTGAAACTGCATTCGATAATACATACTAACAAGAGACCGTACATATGTAAATTATGTAATAAGGCATTCCGTCAGTCCGCACATCTGAAGTTTCATGCGATGTGTCATTTGGACCAAAGACCCCACAAGtgcgaaatatgtaaaaaagcgttCCGCAGCCAGTCGCATCTAAAAAGTCACTTGATGTGCCACACGGACGCCAAGCCTCACGTATGTGAGATTTGTAAAAAAGTGTTCCGCCGCCTCCAAGTACTAAAACGCCATATGATGTTGCACACAGACGAGAGGCCTCACTTTTGTGAAATATGTCGAAAAGCGTTTCGTCTCAAAACACATCTAAACGATCACATATTGTGCCACACGAGCCAGAAGAActtcaaatgtgaaatttgcgaTAAAACGTTCCGGCAGTCAGCCGGTCTGAGGATGCACATGATGTACCACACGGAGGAGATTCACGAATGCGAAATTTGCAAAAAGGTGTTCCGTCACACGCAGCACCTAAAACGTCACATGCTGCGCCACAAGAACGACGGATCACATAAATGCAAAATATGCGATGAAACATTTCGCCAGCATTCAATTTTACGTGCTCACATGAAGTGCCACAAAAGCGATcgaccccacaaatgtgaaatatgcgaTAAGGCGTTCCGTCAACTCTCAAGCTTAAAGTTTCATGTGATGTGGCACGCGGGCATCACACCCTATAAATGTGATATATGTGAAAAGACGTTCCTTCAGCCCTCGGGTTTAAGAATTCACACGTTTTGCCACACCAAAGAGAAGCCCTACAAGTGCGAAGTATGTAATAAAGCGTTCAGCCAGAAGTCGGCTGTACGGAGTCACATGTCACGCCACACGGACGAAAGGCCTCACAAATGCGAgatatgtaaaaaagcattccgTCTGCCACAACTTCTAAAGCGTCATCTGAAGTGCCACTTGGCCGAGTGGCCGCACAAGTGCGAATTTTGCGGCAAACGTTCTCAGACCAAAAATCTGCTGGAGAGACACCGTCTGATTCACATCCGCCAGCTAGAAGAATCGGAAAGAGATCCTTTCCATGAAGGCAGACAAGCTACTGAAGGTAACACGAGTGATACAAGTGGACGTAATTCAGTCGCTATTGTATTGGAAGAAGCTATTAAAGTTGAGGAAACTGACGTTGGCGAGGATGTGAAGAAAGAAGACGATCCCGAAGTACACTTAAAATCCTATTTTGCTTAA
Protein Sequence: MASDDPLKIELRVELCKMGSDLQTLSEREPGFCKGEDDPNKFKCPDCPKIFCRNQKLKLHSIIHTNKRPYICKLCNKAFRQSAHLKFHAMCHLDQRPHKCEICKKAFRSQSHLKSHLMCHTDAKPHVCEICKKVFRRLQVLKRHMMLHTDERPHFCEICRKAFRLKTHLNDHILCHTSQKNFKCEICDKTFRQSAGLRMHMMYHTEEIHECEICKKVFRHTQHLKRHMLRHKNDGSHKCKICDETFRQHSILRAHMKCHKSDRPHKCEICDKAFRQLSSLKFHVMWHAGITPYKCDICEKTFLQPSGLRIHTFCHTKEKPYKCEVCNKAFSQKSAVRSHMSRHTDERPHKCEICKKAFRLPQLLKRHLKCHLAEWPHKCEFCGKRSQTKNLLERHRLIHIRQLEESERDPFHEGRQATEGNTSDTSGRNSVAIVLEEAIKVEETDVGEDVKKEDDPEVHLKSYFA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01537506;
90% Identity: iTF_01537506;
80% Identity: iTF_01537506;