Xruf026671.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- -
- Assembly
- GCA_963966045.2
- Location
- OZ014497.1:23794191-23795555[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0088 14 7.4 0.1 22 47 6 31 3 36 0.85 2 15 0.00013 0.21 13.3 0.4 22 46 34 58 29 64 0.84 3 15 0.055 88 4.9 0.3 22 46 62 86 57 93 0.83 4 15 0.035 56 5.5 0.1 22 46 90 114 84 121 0.83 5 15 0.25 4e+02 2.8 0.2 22 51 118 147 113 150 0.83 6 15 1.6 2.7e+03 0.2 0.1 22 44 146 168 141 178 0.74 7 15 0.68 1.1e+03 1.4 0.3 26 46 178 198 163 204 0.73 8 15 0.05 81 5.0 0.4 22 44 202 224 193 231 0.82 9 15 0.0081 13 7.6 0.3 26 47 234 255 225 260 0.84 10 15 0.094 1.5e+02 4.1 0.2 22 43 258 279 253 288 0.85 11 15 0.088 1.4e+02 4.2 0.1 22 47 286 311 280 317 0.83 12 15 0.73 1.2e+03 1.3 0.1 22 45 314 337 309 343 0.83 13 15 0.0013 2.1 10.1 0.4 22 47 370 395 351 401 0.80 14 15 0.65 1.1e+03 1.4 0.6 22 46 398 422 393 429 0.80 15 15 0.077 1.2e+02 4.4 0.2 22 44 426 448 420 452 0.87
Sequence Information
- Coding Sequence
- atgactcatacaggacaaaagccttacaattgcgaaatttgccaaaaagcattcacccaGAAGAGTGATTTAAGGAcacaccttaggactcatacaggacaaaagccttacaagtgtgaaatttgccgaaAAGCTTTCACCCAGAGTAATAATTTAAAGAGACAcattaggactcatacaggacaaaagccttacaagtgtgaaatttgcaataaaacgttCTCCCAGCAAGACCACTTAACAAGACATgttaggactcatgcaggacaaaagccttacaattgCGAACTTTGCAAAAAAGCATTCACCCAGAGTAGTGGTTTAAGGACACACtttaggactcatacgggacaaaagccttacaaatgtgaaatttgcaataaaatgttCTCCCAGCAAAGCCACTTAACAGTTCATGTTAGGattcatacaggacaaaagccttataagtgtgaaatttgcaataaagcattcTCCGAGCAAAGCAGCTTAACAAAACATATTAGGACTCATACAGAACGAAACTCTTACaattgcgaaatttgccaaaaagcattcacccgGAAGAGTGTTTTAAGGACACACCTTAGGACTCAttcaggacaaaagccttacaagtgtgaaatttgcaataatgcATTCTCCCTGCAACGCAACTTAACCgaacatgttaggactcatacaggacgaAAGTCTTACAGCtgcgaaatttgtcaaaaagcTTTCACCCGGAGTGATAATTTAAGGGCACACCTTcggactcatacgggacaaaagccttacaagtgtgaaatttgcaataagaTGTTCTCCCAGCAAAGCCACTTAACAAGACATggtaggactcatacaggacaaaagccttacaattgCGAACTTTGCCGAAAAGCATTCACCGATAGTACTGGTTTAAGGAGTcaccttaggactcatacgggacaaaagccttacaaatgtgaaatttgcaataaaatgttCTCCCAGCAAGGCCACTTAACAGTTCATGTTAGGattcatacaggacaaaagtcttataagtgtgaaatttgcaataaagcattcTCCGTGCCATACAGCTTAAAACAACATATtcggactcatacaggacaaaagccttacaattgcgaaatttgccaaaaagcattcacccaGAGTATTAGTTTAAGGAcacaccttaggactcatacgggacaaaagccttacaattgtgaaatttgccaaacaGCATTCTCCTATCAGTGCAGTTTAACAAGACACTTTAGGACgcatacgggacaaaagccttacaagtgtgaaatttgcaataaagcattcTCTTTGCAACACAAATTAAGAAGACATGTTAGTACTCatacaaaacaataa
- Protein Sequence
- MTHTGQKPYNCEICQKAFTQKSDLRTHLRTHTGQKPYKCEICRKAFTQSNNLKRHIRTHTGQKPYKCEICNKTFSQQDHLTRHVRTHAGQKPYNCELCKKAFTQSSGLRTHFRTHTGQKPYKCEICNKMFSQQSHLTVHVRIHTGQKPYKCEICNKAFSEQSSLTKHIRTHTERNSYNCEICQKAFTRKSVLRTHLRTHSGQKPYKCEICNNAFSLQRNLTEHVRTHTGRKSYSCEICQKAFTRSDNLRAHLRTHTGQKPYKCEICNKMFSQQSHLTRHGRTHTGQKPYNCELCRKAFTDSTGLRSHLRTHTGQKPYKCEICNKMFSQQGHLTVHVRIHTGQKSYKCEICNKAFSVPYSLKQHIRTHTGQKPYNCEICQKAFTQSISLRTHLRTHTGQKPYNCEICQTAFSYQCSLTRHFRTHTGQKPYKCEICNKAFSLQHKLRRHVSTHTKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01536837; iTF_01536763;
- 90% Identity
- iTF_01536837; iTF_01536763;
- 80% Identity
- iTF_01536837; iTF_01536763;