Xruf026671.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- -
- Assembly
- GCA_963966045.2
- Location
- OZ014497.1:23794191-23795555[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.022 13 7.5 0.3 18 41 10 30 6 32 0.91 2 16 0.00019 0.11 14.1 0.9 18 41 38 58 33 59 0.91 3 16 0.019 11 7.6 1.1 18 40 66 85 61 88 0.74 4 16 0.036 21 6.8 1.5 18 41 94 114 83 116 0.87 5 16 0.22 1.3e+02 4.3 2.9 6 30 111 135 110 144 0.76 6 16 0.009 5.3 8.7 2.4 14 41 146 170 134 175 0.71 7 16 0.0041 2.4 9.8 4.0 6 41 167 198 166 200 0.85 8 16 0.16 93 4.7 0.7 18 41 206 226 202 228 0.81 9 16 0.00021 0.12 13.9 1.5 6 41 223 254 219 255 0.84 10 16 0.21 1.3e+02 4.3 1.4 18 37 262 278 258 284 0.78 11 16 0.0018 1.1 10.9 0.4 18 41 290 310 281 311 0.90 12 16 0.27 1.6e+02 4.0 0.6 18 30 318 331 314 339 0.82 13 16 0.061 36 6.0 1.8 6 40 335 365 334 368 0.75 14 16 0.12 72 5.1 2.2 8 41 365 394 359 396 0.71 15 16 1.1 6.5e+02 2.0 1.7 18 38 402 423 398 424 0.88 16 16 0.13 77 5.0 4.5 5 39 418 448 415 452 0.82
Sequence Information
- Coding Sequence
- atgactcatacaggacaaaagccttacaattgcgaaatttgccaaaaagcattcacccaGAAGAGTGATTTAAGGAcacaccttaggactcatacaggacaaaagccttacaagtgtgaaatttgccgaaAAGCTTTCACCCAGAGTAATAATTTAAAGAGACAcattaggactcatacaggacaaaagccttacaagtgtgaaatttgcaataaaacgttCTCCCAGCAAGACCACTTAACAAGACATgttaggactcatgcaggacaaaagccttacaattgCGAACTTTGCAAAAAAGCATTCACCCAGAGTAGTGGTTTAAGGACACACtttaggactcatacgggacaaaagccttacaaatgtgaaatttgcaataaaatgttCTCCCAGCAAAGCCACTTAACAGTTCATGTTAGGattcatacaggacaaaagccttataagtgtgaaatttgcaataaagcattcTCCGAGCAAAGCAGCTTAACAAAACATATTAGGACTCATACAGAACGAAACTCTTACaattgcgaaatttgccaaaaagcattcacccgGAAGAGTGTTTTAAGGACACACCTTAGGACTCAttcaggacaaaagccttacaagtgtgaaatttgcaataatgcATTCTCCCTGCAACGCAACTTAACCgaacatgttaggactcatacaggacgaAAGTCTTACAGCtgcgaaatttgtcaaaaagcTTTCACCCGGAGTGATAATTTAAGGGCACACCTTcggactcatacgggacaaaagccttacaagtgtgaaatttgcaataagaTGTTCTCCCAGCAAAGCCACTTAACAAGACATggtaggactcatacaggacaaaagccttacaattgCGAACTTTGCCGAAAAGCATTCACCGATAGTACTGGTTTAAGGAGTcaccttaggactcatacgggacaaaagccttacaaatgtgaaatttgcaataaaatgttCTCCCAGCAAGGCCACTTAACAGTTCATGTTAGGattcatacaggacaaaagtcttataagtgtgaaatttgcaataaagcattcTCCGTGCCATACAGCTTAAAACAACATATtcggactcatacaggacaaaagccttacaattgcgaaatttgccaaaaagcattcacccaGAGTATTAGTTTAAGGAcacaccttaggactcatacgggacaaaagccttacaattgtgaaatttgccaaacaGCATTCTCCTATCAGTGCAGTTTAACAAGACACTTTAGGACgcatacgggacaaaagccttacaagtgtgaaatttgcaataaagcattcTCTTTGCAACACAAATTAAGAAGACATGTTAGTACTCatacaaaacaataa
- Protein Sequence
- MTHTGQKPYNCEICQKAFTQKSDLRTHLRTHTGQKPYKCEICRKAFTQSNNLKRHIRTHTGQKPYKCEICNKTFSQQDHLTRHVRTHAGQKPYNCELCKKAFTQSSGLRTHFRTHTGQKPYKCEICNKMFSQQSHLTVHVRIHTGQKPYKCEICNKAFSEQSSLTKHIRTHTERNSYNCEICQKAFTRKSVLRTHLRTHSGQKPYKCEICNNAFSLQRNLTEHVRTHTGRKSYSCEICQKAFTRSDNLRAHLRTHTGQKPYKCEICNKMFSQQSHLTRHGRTHTGQKPYNCELCRKAFTDSTGLRSHLRTHTGQKPYKCEICNKMFSQQGHLTVHVRIHTGQKSYKCEICNKAFSVPYSLKQHIRTHTGQKPYNCEICQKAFTQSISLRTHLRTHTGQKPYNCEICQTAFSYQCSLTRHFRTHTGQKPYKCEICNKAFSLQHKLRRHVSTHTKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01537505;
- 90% Identity
- iTF_01537505;
- 80% Identity
- iTF_01537505;