Xruf046426.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- -
- Assembly
- GCA_963966045.2
- Location
- OZ014503.1:24261047-24262880[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0033 5.3 8.8 0.3 25 50 83 112 79 115 0.79 2 11 0.68 1.1e+03 1.4 0.1 18 44 131 157 115 161 0.79 3 11 1.1 1.8e+03 0.7 0.0 21 44 162 185 159 190 0.87 4 11 1.1 1.8e+03 0.7 0.1 21 45 218 242 214 249 0.84 5 11 0.25 4.1e+02 2.8 0.2 23 44 248 269 245 273 0.90 6 11 0.19 3.1e+02 3.2 0.2 23 44 277 298 269 302 0.87 7 11 0.12 2e+02 3.7 0.0 21 44 303 326 300 331 0.90 8 11 0.062 1e+02 4.7 0.1 21 44 331 354 328 359 0.91 9 11 0.0027 4.3 9.1 0.1 21 44 359 382 356 390 0.87 10 11 0.26 4.1e+02 2.7 0.1 21 44 387 410 383 413 0.88 11 11 0.00081 1.3 10.8 0.1 20 44 414 438 412 447 0.89
Sequence Information
- Coding Sequence
- ATGTCTGTTTGCGATTCAGTTAGAACCGAATTAACGAATGGTTCGAGCGAAATAGAGGTGAAAGAGAAGTTTACTATACAAGGAGAGTTGATAAAAGACTCGGTTGCCGTGTTAGGTGTCTGTACAGAGAACAAAAAGGAGGTGAATTTTCCTAATAACTGTGAAATAGAAAATGAACAAAAGGAAACTATTGACGAGAGAAAAGAAAATAACGCAAATGAAATCGTATTTCCTGACAATAAATCTTCCAAATGTGAAGTATGTGAAAAAGTTTTCGACCAGCCCTCAAATCTAAAGCGACATATGGTCTGCCACGGGGAGAGGCGTCAcatatgtaaaatatgtaagaGAGCGTTCCATTACAAAACGCATCTAAATGATCACATGATGCGCCACTCTGAAGACAgaccttacaaatgtgaaatgtgtGAAAAAGCGTTCCGCAACAAGTGGCATCTAAATAACCATTTGGTGTGTCACACAGGTGAGAGGCCCCATAAATGCGATCTATGTGATAAAGCGTTCAGTAGGTCCTCGTCTCTAAAGGTTCATATGGTATCGCACGCGAAAGAAAGATCCCACAAATGTGAACTATGTGAAAAAACGTTCCATTACAAAGCAGGTCTGTCTGAGCACATGATGTACCACACCGGTGAAAAGCCTCATAAATGTGCAGTATGTAACAAAGCGTTCCATCATAGGGCACACCTAACTGATCACATGGAAGGCCACATAGAAGGAAGGCCCCACCAATGCGAACTATGCAAAAAGACGTTCCAGAAGACCTCGAGCCTAAGGCGCCATAAGAAGTGCCACACAGACCAGGTGAAACCGTATGAATGTGAAGTATGTAAAAAGGCGTTCCGCCGCTCGGCCCATTTAACCAGTCATTTGCTGTGCCACACAAACGAGAGGCCCCACAAGTGCACTCTGTGCAAAAAAGCGTTCCGTCAGTTCGGACATCTAAGTGACCATCTGCTGTGGCACACAGACGAGAAACCGTATGAATGTGAAGTGTGTAAGAAACCGTTCCGTCGCTCCACTGCTCTCAAGCATCACATGATGGCCCACACCGATGAGAAGCCCTATATATGCGAAATATGTAAGAAACAATTCCGCCAGCTCTCAAATCTAAAGAGCCACGTGATGAGCCACACGAACGAGAAACCCTTcgaatgtgaaatatgtaagaaAGCGTTTCGTTATAGAGCGACTCTGACGGAGCACTTGCTGTGCCACACAAGCgagaagcctcacaaatgtggaGTATGCGATAAAGCGTTCCGTTGGGCTTCAAATCTGAAGCGTCACAAATGCCACACGGATAAACCCAAATGTGGCAAAGAACTCGTTGCCACCGGAAATTTGCTGAGGCACCTCCTCGTTAGCACTGGGAAGAAGAAACCTCTCAGATCAGAACAGGTTCTCTTCAGTCCCCCGTCAGATATCGATGTATTGGATCAGACAATTAAAATTGAGGAAATTCAAATCGTTGAAAGCGTGAAGGAAGAAGTATAA
- Protein Sequence
- MSVCDSVRTELTNGSSEIEVKEKFTIQGELIKDSVAVLGVCTENKKEVNFPNNCEIENEQKETIDERKENNANEIVFPDNKSSKCEVCEKVFDQPSNLKRHMVCHGERRHICKICKRAFHYKTHLNDHMMRHSEDRPYKCEMCEKAFRNKWHLNNHLVCHTGERPHKCDLCDKAFSRSSSLKVHMVSHAKERSHKCELCEKTFHYKAGLSEHMMYHTGEKPHKCAVCNKAFHHRAHLTDHMEGHIEGRPHQCELCKKTFQKTSSLRRHKKCHTDQVKPYECEVCKKAFRRSAHLTSHLLCHTNERPHKCTLCKKAFRQFGHLSDHLLWHTDEKPYECEVCKKPFRRSTALKHHMMAHTDEKPYICEICKKQFRQLSNLKSHVMSHTNEKPFECEICKKAFRYRATLTEHLLCHTSEKPHKCGVCDKAFRWASNLKRHKCHTDKPKCGKELVATGNLLRHLLVSTGKKKPLRSEQVLFSPPSDIDVLDQTIKIEEIQIVESVKEEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01536891;
- 90% Identity
- iTF_01536891;
- 80% Identity
- iTF_01536891;