Basic Information

Insect: Xestobium rufovillosum
Gene Symbol: -
Assembly: GCA_963966045.2
Location: OZ014503.1:24261047-24262880[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 8e-06 0.00064 21.6 1.5 2 20 84 102 83 105 0.96

2 14 0.0011 0.09 14.8 7.5 1 23 110 132 110 132 0.97

3 14 1.3e-05 0.001 20.9 0.7 1 20 138 157 138 158 0.97

4 14 3.7e-07 3e-05 25.7 1.7 1 23 166 188 166 188 0.97

5 14 0.001 0.08 15.0 3.8 1 23 194 216 194 216 0.98

6 14 0.00088 0.071 15.1 5.8 1 23 222 244 222 244 0.96

7 14 0.037 3 10.0 8.0 1 21 250 270 250 272 0.94

8 14 6.4e-05 0.0052 18.7 3.3 1 20 279 298 279 301 0.95

9 14 0.00072 0.058 15.4 4.1 1 23 307 329 307 329 0.97

10 14 1.2e-06 9.5e-05 24.2 1.4 1 23 335 357 335 357 0.98

11 14 1.7e-06 0.00013 23.7 1.1 1 23 363 385 363 385 0.98

12 14 0.00037 0.03 16.3 2.0 1 20 391 410 391 413 0.94

13 14 0.0005 0.04 15.9 1.3 1 20 419 438 419 440 0.94

14 14 0.28 22 7.3 0.4 1 21 437 461 437 462 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	8e-06	0.00064	21.6	1.5	2	20	84	102	83	105	0.96
2	14	0.0011	0.09	14.8	7.5	1	23	110	132	110	132	0.97
3	14	1.3e-05	0.001	20.9	0.7	1	20	138	157	138	158	0.97
4	14	3.7e-07	3e-05	25.7	1.7	1	23	166	188	166	188	0.97
5	14	0.001	0.08	15.0	3.8	1	23	194	216	194	216	0.98
6	14	0.00088	0.071	15.1	5.8	1	23	222	244	222	244	0.96
7	14	0.037	3	10.0	8.0	1	21	250	270	250	272	0.94
8	14	6.4e-05	0.0052	18.7	3.3	1	20	279	298	279	301	0.95
9	14	0.00072	0.058	15.4	4.1	1	23	307	329	307	329	0.97
10	14	1.2e-06	9.5e-05	24.2	1.4	1	23	335	357	335	357	0.98
11	14	1.7e-06	0.00013	23.7	1.1	1	23	363	385	363	385	0.98
12	14	0.00037	0.03	16.3	2.0	1	20	391	410	391	413	0.94
13	14	0.0005	0.04	15.9	1.3	1	20	419	438	419	440	0.94
14	14	0.28	22	7.3	0.4	1	21	437	461	437	462	0.92

Sequence Information

Coding Sequence: ATGTCTGTTTGCGATTCAGTTAGAACCGAATTAACGAATGGTTCGAGCGAAATAGAGGTGAAAGAGAAGTTTACTATACAAGGAGAGTTGATAAAAGACTCGGTTGCCGTGTTAGGTGTCTGTACAGAGAACAAAAAGGAGGTGAATTTTCCTAATAACTGTGAAATAGAAAATGAACAAAAGGAAACTATTGACGAGAGAAAAGAAAATAACGCAAATGAAATCGTATTTCCTGACAATAAATCTTCCAAATGTGAAGTATGTGAAAAAGTTTTCGACCAGCCCTCAAATCTAAAGCGACATATGGTCTGCCACGGGGAGAGGCGTCAcatatgtaaaatatgtaagaGAGCGTTCCATTACAAAACGCATCTAAATGATCACATGATGCGCCACTCTGAAGACAgaccttacaaatgtgaaatgtgtGAAAAAGCGTTCCGCAACAAGTGGCATCTAAATAACCATTTGGTGTGTCACACAGGTGAGAGGCCCCATAAATGCGATCTATGTGATAAAGCGTTCAGTAGGTCCTCGTCTCTAAAGGTTCATATGGTATCGCACGCGAAAGAAAGATCCCACAAATGTGAACTATGTGAAAAAACGTTCCATTACAAAGCAGGTCTGTCTGAGCACATGATGTACCACACCGGTGAAAAGCCTCATAAATGTGCAGTATGTAACAAAGCGTTCCATCATAGGGCACACCTAACTGATCACATGGAAGGCCACATAGAAGGAAGGCCCCACCAATGCGAACTATGCAAAAAGACGTTCCAGAAGACCTCGAGCCTAAGGCGCCATAAGAAGTGCCACACAGACCAGGTGAAACCGTATGAATGTGAAGTATGTAAAAAGGCGTTCCGCCGCTCGGCCCATTTAACCAGTCATTTGCTGTGCCACACAAACGAGAGGCCCCACAAGTGCACTCTGTGCAAAAAAGCGTTCCGTCAGTTCGGACATCTAAGTGACCATCTGCTGTGGCACACAGACGAGAAACCGTATGAATGTGAAGTGTGTAAGAAACCGTTCCGTCGCTCCACTGCTCTCAAGCATCACATGATGGCCCACACCGATGAGAAGCCCTATATATGCGAAATATGTAAGAAACAATTCCGCCAGCTCTCAAATCTAAAGAGCCACGTGATGAGCCACACGAACGAGAAACCCTTcgaatgtgaaatatgtaagaaAGCGTTTCGTTATAGAGCGACTCTGACGGAGCACTTGCTGTGCCACACAAGCgagaagcctcacaaatgtggaGTATGCGATAAAGCGTTCCGTTGGGCTTCAAATCTGAAGCGTCACAAATGCCACACGGATAAACCCAAATGTGGCAAAGAACTCGTTGCCACCGGAAATTTGCTGAGGCACCTCCTCGTTAGCACTGGGAAGAAGAAACCTCTCAGATCAGAACAGGTTCTCTTCAGTCCCCCGTCAGATATCGATGTATTGGATCAGACAATTAAAATTGAGGAAATTCAAATCGTTGAAAGCGTGAAGGAAGAAGTATAA
Protein Sequence: MSVCDSVRTELTNGSSEIEVKEKFTIQGELIKDSVAVLGVCTENKKEVNFPNNCEIENEQKETIDERKENNANEIVFPDNKSSKCEVCEKVFDQPSNLKRHMVCHGERRHICKICKRAFHYKTHLNDHMMRHSEDRPYKCEMCEKAFRNKWHLNNHLVCHTGERPHKCDLCDKAFSRSSSLKVHMVSHAKERSHKCELCEKTFHYKAGLSEHMMYHTGEKPHKCAVCNKAFHHRAHLTDHMEGHIEGRPHQCELCKKTFQKTSSLRRHKKCHTDQVKPYECEVCKKAFRRSAHLTSHLLCHTNERPHKCTLCKKAFRQFGHLSDHLLWHTDEKPYECEVCKKPFRRSTALKHHMMAHTDEKPYICEICKKQFRQLSNLKSHVMSHTNEKPFECEICKKAFRYRATLTEHLLCHTSEKPHKCGVCDKAFRWASNLKRHKCHTDKPKCGKELVATGNLLRHLLVSTGKKKPLRSEQVLFSPPSDIDVLDQTIKIEEIQIVESVKEEV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01537504;
90% Identity: iTF_01537504;
80% Identity: iTF_01537504;