Basic Information

Insect: Xestobium rufovillosum
Gene Symbol: -
Assembly: GCA_963966045.2
Location: OZ014503.1:24287558-24289413[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 8.1 1.3e+04 -2.1 0.0 21 46 72 97 66 103 0.75

2 15 0.065 1e+02 4.7 0.4 8 44 115 151 109 155 0.75

3 15 0.044 71 5.2 0.1 21 44 156 179 152 183 0.89

4 15 0.28 4.5e+02 2.6 0.1 21 44 184 207 180 210 0.88

5 15 0.049 79 5.1 0.0 20 44 211 235 198 240 0.83

6 15 0.019 30 6.4 0.4 21 48 240 266 237 268 0.86

7 15 0.02 32 6.3 0.1 14 44 261 291 257 296 0.87

8 15 5.7 9.2e+03 -1.6 0.0 26 44 301 319 299 323 0.88

9 15 1.9 3.1e+03 -0.1 0.1 21 35 324 338 316 352 0.76

10 15 0.0098 16 7.3 0.0 26 44 357 375 350 379 0.88

11 15 0.052 83 5.0 0.0 21 44 380 403 377 407 0.91

12 15 0.014 22 6.8 0.1 21 43 408 430 405 435 0.90

13 15 0.012 20 7.0 0.2 22 44 437 459 431 463 0.90

14 15 0.034 54 5.6 0.5 22 45 465 488 461 493 0.87

15 15 1.9 3.1e+03 -0.1 0.1 26 48 510 532 501 538 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	8.1	1.3e+04	-2.1	0.0	21	46	72	97	66	103	0.75
2	15	0.065	1e+02	4.7	0.4	8	44	115	151	109	155	0.75
3	15	0.044	71	5.2	0.1	21	44	156	179	152	183	0.89
4	15	0.28	4.5e+02	2.6	0.1	21	44	184	207	180	210	0.88
5	15	0.049	79	5.1	0.0	20	44	211	235	198	240	0.83
6	15	0.019	30	6.4	0.4	21	48	240	266	237	268	0.86
7	15	0.02	32	6.3	0.1	14	44	261	291	257	296	0.87
8	15	5.7	9.2e+03	-1.6	0.0	26	44	301	319	299	323	0.88
9	15	1.9	3.1e+03	-0.1	0.1	21	35	324	338	316	352	0.76
10	15	0.0098	16	7.3	0.0	26	44	357	375	350	379	0.88
11	15	0.052	83	5.0	0.0	21	44	380	403	377	407	0.91
12	15	0.014	22	6.8	0.1	21	43	408	430	405	435	0.90
13	15	0.012	20	7.0	0.2	22	44	437	459	431	463	0.90
14	15	0.034	54	5.6	0.5	22	45	465	488	461	493	0.87
15	15	1.9	3.1e+03	-0.1	0.1	26	48	510	532	501	538	0.81

Sequence Information

Coding Sequence: ATGTCCTTTTGCGATCCGATTAAAACTGAATTAGAAACAGAATGGGTTGAAATAAAGATGGAAGAAAAATTTGTAATTGAGGAACAAGAGTCGATGAAAGAATCGGTTGTTACGTCAGATTTTTGTATAGAGGACAAAAAGGCGGTGATTATTCTGAATGCAAATaacgatgaaataaaaaatgaatctAATCTTCAAAGAAAAACTGATAATAGCACAAAGAAATTCAGATGTCCCGATTGTCCGAAAGTCTTTGTCTACAACTCCTCGTTGAAATACCATGCAACATTACATACAgGAAAGAGACCATACGAATGTGATCAATGTGAGAAAGCGTTCAATCATCCCAACACTTTAAAGAACCACAAGATTACCCACACTGACAAGAGACCGCACGCATGCTTAGTATGTAATAAAACGTTCCGTCAGAAATCACATCTGAATACTCATATGAGGTGCCATACGGATGAGAGACCGTACAAATGTGGCATATGTGATGAAGCATTCCGTCAACCCAACCCTTTAAAGATGCATATGCTGAGCCACTCGGATGAGAGGCCCTACATCTGCGAAGTGTGTAACAAAACGTTCCATCAGCCCAGCTTTTTAAAGAAGCACATGATGAGCCACACAGATGAGAGACCCTACAAATGTGGAATATGTGATAAAGCATTCCGCTATAAATGGAATCTAAATGATCATATGATGTGCCACACGGAAGAGAGGCCTCATACCTGCGAAATATGTAACAAAGCTTTCCATCAACTCAGCTCTCTGACGAAGCATAAGATCAGGCACACGGGTGACAGGCCCTACACCTGTGAAGTATGCAACAAAGCATACCGTTATAAATGGAATCTAAGTGATCATATGTTGTGCCACACGGATGTGAAGCTCCACGCCTGTGAAATATGTAACAAGGCATTCTATCAGCTCAGCTATCTAAAGAAGCACATGATAAGCCATACGGATGAGAGACCccataaatgtgaaatatgtaacaaAGCATTCCACTATCAGTTTACTCTAAATAATCATATGATGTGCCATACGGATGAGGGGCACCACATTtgtgaaatatgtaataaaGTGTTTAACCAGTCCAGCTCGTTAAAGAAGCATATTATGTGCCACACAGATGAGAGACCCTACAGTTGCGAAATATGTGACAAAGCATTCCGTTACAAATGGAATCTAAATGAGCATATGATGTGCCACACGGGTGAGAAGCCCCACACCTGCGACATTTGTAACAAAGCTTTTTATCAACCCAGCTCTCTGAAGAAGCACAAGATTAGTCACACAGACAATAGGCCCTACGTGTGTGAAGTATGTAACGCGGCATTCCGTTATAAATCAAATCTAAATAAACATATAATATGTCACTCGGATGAGAGAAACCACACGTGTGAAACATGTAAAAAGTCGTTTCGTTATAAAACGAATCTGAATCGCCACATGAGGCGCCACAAGTCCTCGAATCTAAACAATCAAATGACACACCAGAGAAGCGGCAAAAGATCATATCGCTGCCAAATATGCGCGATGGTTTTTAATCGGAAAGGTGAACTCGATGAACATTTTAATAATCATCATAAAGGTAATACGGGCACAAAGCCAGAGAAGTTAAAATTCGTTGGATTAGAAGAAGGAATTAAAGCTGAAGAAAGTCAAATTGATGAAGTTGTGAAGAAAGAAGACACATTTTGA
Protein Sequence: MSFCDPIKTELETEWVEIKMEEKFVIEEQESMKESVVTSDFCIEDKKAVIILNANNDEIKNESNLQRKTDNSTKKFRCPDCPKVFVYNSSLKYHATLHTGKRPYECDQCEKAFNHPNTLKNHKITHTDKRPHACLVCNKTFRQKSHLNTHMRCHTDERPYKCGICDEAFRQPNPLKMHMLSHSDERPYICEVCNKTFHQPSFLKKHMMSHTDERPYKCGICDKAFRYKWNLNDHMMCHTEERPHTCEICNKAFHQLSSLTKHKIRHTGDRPYTCEVCNKAYRYKWNLSDHMLCHTDVKLHACEICNKAFYQLSYLKKHMISHTDERPHKCEICNKAFHYQFTLNNHMMCHTDEGHHICEICNKVFNQSSSLKKHIMCHTDERPYSCEICDKAFRYKWNLNEHMMCHTGEKPHTCDICNKAFYQPSSLKKHKISHTDNRPYVCEVCNAAFRYKSNLNKHIICHSDERNHTCETCKKSFRYKTNLNRHMRRHKSSNLNNQMTHQRSGKRSYRCQICAMVFNRKGELDEHFNNHHKGNTGTKPEKLKFVGLEEGIKAEESQIDEVVKKEDTF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01536851;
90% Identity: iTF_01536851;
80% Identity: iTF_01536851;