Xruf043451.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- -
- Assembly
- GCA_963966045.2
- Location
- OZ014502.1:26214824-26216431[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.033 53 5.6 0.1 26 44 72 90 67 94 0.90 2 14 0.028 44 5.8 0.8 21 45 95 119 91 123 0.85 3 14 0.0095 15 7.3 0.3 18 44 120 146 118 150 0.89 4 14 0.0069 11 7.8 0.2 21 46 151 176 147 184 0.84 5 14 0.54 8.6e+02 1.7 0.1 21 43 179 201 175 206 0.83 6 14 0.46 7.4e+02 1.9 0.5 20 43 206 229 199 233 0.84 7 14 6.2e-05 0.1 14.3 0.9 20 44 234 258 224 264 0.82 8 14 0.016 26 6.6 0.3 26 44 268 286 263 290 0.90 9 14 0.16 2.6e+02 3.4 0.5 17 43 314 341 301 343 0.81 10 14 0.055 89 4.9 0.5 14 44 339 370 335 374 0.84 11 14 0.0072 12 7.7 0.2 21 45 375 399 372 405 0.90 12 14 0.2 3.2e+02 3.1 0.0 26 44 408 426 403 434 0.84 13 14 0.098 1.6e+02 4.1 0.1 21 44 431 454 427 458 0.89 14 14 0.00031 0.49 12.1 0.3 21 44 459 482 456 487 0.92
Sequence Information
- Coding Sequence
- ATGTCTTTTTACGACCCAATAAAATCTGAATTAAGTAATAATTGTGGTGAAATTGAAACAGAAGAAAAATCCATCGTTGACGAAGGAGGATCTCAAACAGTGTCAAAGACTGGCATTTTACCGAATGATGAAATCGAGAACGAATCGGCAGAAACTGttcaagaagaagaagaaaactcAAACAAATTGATACATGTGCAACAAAGACTgcacaaatgcgaaatttgcgAAAAAGCGTTTCGTCAGTCTTCCCAGCTAAAGACTCATATGATCTGCCACTCGGATGAGAGACCGCATACATGTGAGGTATGCAAAGAAGCGTTCCGTTACGTCCAGAGTTTAAAGTGTCACATGAGGCGCCACACGGACGAGAGGCCCTACGAATGTGAGATTTGTAAAGCGACGTTCCGCAACCACTCGACTTTAAAGTGTCACATGGTGAATCACACGGACGAGAGACCATACAAGTGTGAATTATGTGAAAAGACGTACCGTCAGCTCAATAGTCTGAGGAAGCACATGATGAGCCACACGGATGAGAAGCCGTACGTTtgcgaaatatgtaaaaaagcgttCCGTTACCTCGACAGTTTAAAGTCTCATAGGATGTGTCACACGGACGAGAAGCCTTACAAATGCGAAATATGTGAAATGTCATTTCGTTCAAAGTCAACTTTAAAGTGTCACACGAGGTGTCACACGAAAGAGAAGCcttacaaatgcgaaatttgcgAAAAACCGTTCAGGCAGGTCTCGAATTTAAAGCGCCACCTGTTGTGCCACACCAACACGATGTCCTACCAATGCGAAATATGCAAGAAATTGTTCCGTCAGAATACAAATTTAAAGTGTCACATGTTGTGCCACTCGGACGAAATGTCTTACAAATGCGAAGTTTGTGATAAAGAGTTTCATGCACACTCGAATTTAAAGTCTCACATGAGGTGCCACTCAGACGAAAAGCCCTACAAATGTGATGTATGCGAAAAATCGTTCCGAGTGAGTGCAGCTTTAAAGTGTCACTCGAGGTCCCACACGAAAGAGAAGCCTTACAAATGCGAGGTATGCCAAAAAGCGTTCAATCAGAACTCTACTCTAGTGAGTCACATGTTATGCCACACCAACGAGAAGCCTTACAAATGCGTAATATGCGAGAAGGCGTTCCGCCAGAACTCGGCTTTAAAGAGTCACATGAAGTGCCACACGAACAAGATGTCCCACCAATGTGAACTATGTAAAAAAGAGTTCCGCCAGAGCTCTTCTTTAAAGACTCATATGTTGTGCCACACCAAAGAGAAGCCCTACGCGTGTGAAATATGCAATAAAGCGTTCAGTCAGAATTCAACTTTAAAGGTCCACATGTTGTGCCACACCGACGAGAAGCCGCACAAGTGTGAAATATGTCAAAAGGAATTTCGTAATAACTCGAATTTAAAGCGTCATTTGTTGTGCCACACCGACGAGAGGCGCTGCGAAGTAGAACAAGTTTATTACCAATAA
- Protein Sequence
- MSFYDPIKSELSNNCGEIETEEKSIVDEGGSQTVSKTGILPNDEIENESAETVQEEEENSNKLIHVQQRLHKCEICEKAFRQSSQLKTHMICHSDERPHTCEVCKEAFRYVQSLKCHMRRHTDERPYECEICKATFRNHSTLKCHMVNHTDERPYKCELCEKTYRQLNSLRKHMMSHTDEKPYVCEICKKAFRYLDSLKSHRMCHTDEKPYKCEICEMSFRSKSTLKCHTRCHTKEKPYKCEICEKPFRQVSNLKRHLLCHTNTMSYQCEICKKLFRQNTNLKCHMLCHSDEMSYKCEVCDKEFHAHSNLKSHMRCHSDEKPYKCDVCEKSFRVSAALKCHSRSHTKEKPYKCEVCQKAFNQNSTLVSHMLCHTNEKPYKCVICEKAFRQNSALKSHMKCHTNKMSHQCELCKKEFRQSSSLKTHMLCHTKEKPYACEICNKAFSQNSTLKVHMLCHTDEKPHKCEICQKEFRNNSNLKRHLLCHTDERRCEVEQVYYQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01536899;
- 90% Identity
- iTF_01536899;
- 80% Identity
- iTF_01536899;