Basic Information

Insect: Xestobium rufovillosum
Gene Symbol: -
Assembly: GCA_963966045.2
Location: OZ014502.1:26214824-26216431[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.5e-05 0.0012 20.7 3.9 1 20 71 90 71 93 0.95

2 15 0.031 2.5 10.3 5.1 1 23 99 121 99 121 0.98

3 15 0.0064 0.51 12.4 4.3 1 23 127 149 127 149 0.96

4 15 2.6e-06 0.00021 23.1 2.1 1 23 155 177 155 177 0.99

5 15 0.00029 0.024 16.6 2.7 1 21 183 203 183 205 0.94

6 15 0.029 2.4 10.3 6.8 1 21 211 231 211 233 0.93

7 15 1.1e-05 0.00085 21.2 2.4 1 20 239 258 239 261 0.95

8 15 0.032 2.5 10.2 6.5 1 21 267 287 267 289 0.94

9 15 0.0013 0.1 14.6 6.3 1 21 295 315 295 317 0.96

10 15 0.0015 0.12 14.4 2.2 1 23 323 345 323 345 0.97

11 15 4.1e-05 0.0033 19.3 2.2 1 21 351 371 351 373 0.95

12 15 1.4e-05 0.0011 20.8 2.6 1 21 379 399 379 401 0.96

13 15 0.0002 0.016 17.2 5.5 1 21 407 427 407 429 0.95

14 15 4.9e-06 0.0004 22.2 1.5 1 21 435 455 435 457 0.94

15 15 2e-05 0.0016 20.3 5.2 1 20 463 482 463 485 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.5e-05	0.0012	20.7	3.9	1	20	71	90	71	93	0.95
2	15	0.031	2.5	10.3	5.1	1	23	99	121	99	121	0.98
3	15	0.0064	0.51	12.4	4.3	1	23	127	149	127	149	0.96
4	15	2.6e-06	0.00021	23.1	2.1	1	23	155	177	155	177	0.99
5	15	0.00029	0.024	16.6	2.7	1	21	183	203	183	205	0.94
6	15	0.029	2.4	10.3	6.8	1	21	211	231	211	233	0.93
7	15	1.1e-05	0.00085	21.2	2.4	1	20	239	258	239	261	0.95
8	15	0.032	2.5	10.2	6.5	1	21	267	287	267	289	0.94
9	15	0.0013	0.1	14.6	6.3	1	21	295	315	295	317	0.96
10	15	0.0015	0.12	14.4	2.2	1	23	323	345	323	345	0.97
11	15	4.1e-05	0.0033	19.3	2.2	1	21	351	371	351	373	0.95
12	15	1.4e-05	0.0011	20.8	2.6	1	21	379	399	379	401	0.96
13	15	0.0002	0.016	17.2	5.5	1	21	407	427	407	429	0.95
14	15	4.9e-06	0.0004	22.2	1.5	1	21	435	455	435	457	0.94
15	15	2e-05	0.0016	20.3	5.2	1	20	463	482	463	485	0.94

Sequence Information

Coding Sequence: ATGTCTTTTTACGACCCAATAAAATCTGAATTAAGTAATAATTGTGGTGAAATTGAAACAGAAGAAAAATCCATCGTTGACGAAGGAGGATCTCAAACAGTGTCAAAGACTGGCATTTTACCGAATGATGAAATCGAGAACGAATCGGCAGAAACTGttcaagaagaagaagaaaactcAAACAAATTGATACATGTGCAACAAAGACTgcacaaatgcgaaatttgcgAAAAAGCGTTTCGTCAGTCTTCCCAGCTAAAGACTCATATGATCTGCCACTCGGATGAGAGACCGCATACATGTGAGGTATGCAAAGAAGCGTTCCGTTACGTCCAGAGTTTAAAGTGTCACATGAGGCGCCACACGGACGAGAGGCCCTACGAATGTGAGATTTGTAAAGCGACGTTCCGCAACCACTCGACTTTAAAGTGTCACATGGTGAATCACACGGACGAGAGACCATACAAGTGTGAATTATGTGAAAAGACGTACCGTCAGCTCAATAGTCTGAGGAAGCACATGATGAGCCACACGGATGAGAAGCCGTACGTTtgcgaaatatgtaaaaaagcgttCCGTTACCTCGACAGTTTAAAGTCTCATAGGATGTGTCACACGGACGAGAAGCCTTACAAATGCGAAATATGTGAAATGTCATTTCGTTCAAAGTCAACTTTAAAGTGTCACACGAGGTGTCACACGAAAGAGAAGCcttacaaatgcgaaatttgcgAAAAACCGTTCAGGCAGGTCTCGAATTTAAAGCGCCACCTGTTGTGCCACACCAACACGATGTCCTACCAATGCGAAATATGCAAGAAATTGTTCCGTCAGAATACAAATTTAAAGTGTCACATGTTGTGCCACTCGGACGAAATGTCTTACAAATGCGAAGTTTGTGATAAAGAGTTTCATGCACACTCGAATTTAAAGTCTCACATGAGGTGCCACTCAGACGAAAAGCCCTACAAATGTGATGTATGCGAAAAATCGTTCCGAGTGAGTGCAGCTTTAAAGTGTCACTCGAGGTCCCACACGAAAGAGAAGCCTTACAAATGCGAGGTATGCCAAAAAGCGTTCAATCAGAACTCTACTCTAGTGAGTCACATGTTATGCCACACCAACGAGAAGCCTTACAAATGCGTAATATGCGAGAAGGCGTTCCGCCAGAACTCGGCTTTAAAGAGTCACATGAAGTGCCACACGAACAAGATGTCCCACCAATGTGAACTATGTAAAAAAGAGTTCCGCCAGAGCTCTTCTTTAAAGACTCATATGTTGTGCCACACCAAAGAGAAGCCCTACGCGTGTGAAATATGCAATAAAGCGTTCAGTCAGAATTCAACTTTAAAGGTCCACATGTTGTGCCACACCGACGAGAAGCCGCACAAGTGTGAAATATGTCAAAAGGAATTTCGTAATAACTCGAATTTAAAGCGTCATTTGTTGTGCCACACCGACGAGAGGCGCTGCGAAGTAGAACAAGTTTATTACCAATAA
Protein Sequence: MSFYDPIKSELSNNCGEIETEEKSIVDEGGSQTVSKTGILPNDEIENESAETVQEEEENSNKLIHVQQRLHKCEICEKAFRQSSQLKTHMICHSDERPHTCEVCKEAFRYVQSLKCHMRRHTDERPYECEICKATFRNHSTLKCHMVNHTDERPYKCELCEKTYRQLNSLRKHMMSHTDEKPYVCEICKKAFRYLDSLKSHRMCHTDEKPYKCEICEMSFRSKSTLKCHTRCHTKEKPYKCEICEKPFRQVSNLKRHLLCHTNTMSYQCEICKKLFRQNTNLKCHMLCHSDEMSYKCEVCDKEFHAHSNLKSHMRCHSDEKPYKCDVCEKSFRVSAALKCHSRSHTKEKPYKCEVCQKAFNQNSTLVSHMLCHTNEKPYKCVICEKAFRQNSALKSHMKCHTNKMSHQCELCKKEFRQSSSLKTHMLCHTKEKPYACEICNKAFSQNSTLKVHMLCHTDEKPHKCEICQKEFRNNSNLKRHLLCHTDERRCEVEQVYYQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01537488;
90% Identity: iTF_01537488;
80% Identity: iTF_01537488;