Xruf026430.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- -
- Assembly
- GCA_963966045.2
- Location
- OZ014497.1:22394974-22396578[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.00038 0.61 11.8 0.0 21 45 32 56 29 60 0.92 2 8 0.00054 0.88 11.3 0.3 21 44 93 116 85 122 0.90 3 8 0.012 19 7.0 0.0 21 43 149 171 139 178 0.87 4 8 0.06 97 4.8 0.1 21 44 207 230 199 238 0.86 5 8 1.1 1.8e+03 0.7 0.1 26 44 239 257 230 265 0.85 6 8 0.57 9.2e+02 1.6 0.0 21 44 262 285 257 289 0.89 7 8 0.00025 0.4 12.4 0.0 21 44 318 341 313 348 0.88 8 8 0.0075 12 7.6 0.0 21 45 374 398 369 405 0.88
Sequence Information
- Coding Sequence
- ATGGTGCCACGACAAAGACGTTTTAAGTGTGAAATGTGCGGCAAGTGTTTTAAACTAAACTGTAACCTTACCACTCACATGCTTGTCCACACAGGTGAGAAACCACACGTTTGCAAAGTTTGCAAGAAAGTGTTCGCACAATTAGGAAATTTAAACAGGCACTTGTCGACGCACACCAATGGAAGCTCTATCAAGCCAACCCCATACAGGTGTGAAATTTGTCAGAAAGCGTTCACATCGCGTTGTAGTTTAACGAATCACGTTAGGATACATACGGGAGAAAGGCCGCACAAGTGTGAGATTTGCAAGAAAGCGTTCGTGCAGAAATGCAATTTAAAAAGACATTTGCTGACACACACCAAACAAACTTTACACAAATGTGAAGTTTGCCAAAAAACATTATCTGGTCGTTCCGCTTTAAAGGCACATATCAGAACGCACACAGGAGAAAGGCCTTACAAGTGTGACATTTGCAAGAAAGTGTTCATACAGAAAAACGCTTTAAAGAAGCACTCGCTGACACACACCACACCAAAATTACGAAAATtatacaaatgtgaaatttgccaaagaGTGCTGCTCTCTAGTAGTTTAACAGTACATGccaggatgcacacaagagaaAAACCTTATGAGTGTGAGATCTGCAAGAAAGCATTTGTGCAGATGATCAGTTTAAAGAGGCATAAAATGACACACGCACACCCCAAagtaaaatgtgaaatttgccaaagaGTGCTCTCTAGTAGTTCCGCTTTAACGGCACATGCCGCGATGCACAGAAGAGAAATGCCTTACAAATGTGTAATTTGCAAGAAATCATTCGAGCAGATGATCACTTTAAAAATGCATTTGCCGAACCACACCGGACTAAAAttacacaaatgtgaaatttgccaaaaagcgcTTTCTTGTCGTTCCGCTTTATTGGTTcatgttaggactcacacaggagaGAAGCCTTACGAGTGTGAGATTTGCAAGAAAGCGTTCCGACAGTCAAACACTTTAAAGGAGCACTTGTTGACACACTTGAAACTAAAAatacacaaatgtgaaatttgccaacaAGCGCTTTCTTGTCGTTCCGCTTTATTGGTTcatgttaggactcacacaggagaGAAGCCTTACGTGTGTGAGATTTGCAAGAAAGCATTCAGGTACTTGGTCACTTTAAAGAGGCATTTGTTGATACACACCGGGGTCAAGTcatacaagtgtgaaatttgtaataaaGCATTCAACGGCGTGAATAAATTAAAGATACACTTGTTTGAACATACTAATAAAAATCCATTTTTCTGTAAGATTCGCAGTATTTTCTTTAAGTCGGAATGGTATTTGAGGGAGCATAAAAGGATGCACAAAGCAGAAAACGTCGGGGAAGTACAAGATGAACAAGTCGATGTTAATGTAAAGTTGGAAGAAAATATAACGGGCGAAGAAGAAAAAGCAATTGTCGGATCTGAAAATTTGGAAACGCTCATCAAAATTGAGGAACATGaggtgaaaattgaaaatagtaTTGACATAAAagtagaaaatattttagacgCAGAAGAAATTTCTGGAAGTTCTGCAAAACTTTGCAAAAATGAGTAG
- Protein Sequence
- MVPRQRRFKCEMCGKCFKLNCNLTTHMLVHTGEKPHVCKVCKKVFAQLGNLNRHLSTHTNGSSIKPTPYRCEICQKAFTSRCSLTNHVRIHTGERPHKCEICKKAFVQKCNLKRHLLTHTKQTLHKCEVCQKTLSGRSALKAHIRTHTGERPYKCDICKKVFIQKNALKKHSLTHTTPKLRKLYKCEICQRVLLSSSLTVHARMHTREKPYECEICKKAFVQMISLKRHKMTHAHPKVKCEICQRVLSSSSALTAHAAMHRREMPYKCVICKKSFEQMITLKMHLPNHTGLKLHKCEICQKALSCRSALLVHVRTHTGEKPYECEICKKAFRQSNTLKEHLLTHLKLKIHKCEICQQALSCRSALLVHVRTHTGEKPYVCEICKKAFRYLVTLKRHLLIHTGVKSYKCEICNKAFNGVNKLKIHLFEHTNKNPFFCKIRSIFFKSEWYLREHKRMHKAENVGEVQDEQVDVNVKLEENITGEEEKAIVGSENLETLIKIEEHEVKIENSIDIKVENILDAEEISGSSAKLCKNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01536864;
- 90% Identity
- iTF_01536864;
- 80% Identity
- iTF_01536864;