Xruf026430.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- -
- Assembly
- GCA_963966045.2
- Location
- OZ014497.1:22394974-22396578[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1.1e-05 0.00085 21.2 5.6 1 23 8 30 8 30 0.98 2 16 1.4e-06 0.00011 24.0 1.4 1 23 36 58 36 58 0.97 3 16 3.7e-06 0.0003 22.6 2.6 1 23 69 91 69 91 0.99 4 16 5.9e-06 0.00047 22.0 5.6 1 23 97 119 97 119 0.98 5 16 7.1e-06 0.00057 21.7 1.1 1 23 125 147 125 147 0.98 6 16 2.3e-06 0.00019 23.3 1.4 1 23 153 175 153 175 0.98 7 16 0.0054 0.43 12.7 0.2 1 23 184 205 184 205 0.99 8 16 9.9e-06 0.00079 21.3 0.7 1 23 211 233 211 233 0.99 9 16 0.00036 0.029 16.3 0.0 2 23 239 260 238 260 0.96 10 16 0.0025 0.2 13.7 0.5 1 20 266 285 266 288 0.94 11 16 0.0071 0.58 12.3 2.3 1 23 294 316 294 316 0.98 12 16 1.2e-06 0.0001 24.1 0.8 1 23 322 344 322 344 0.99 13 16 0.03 2.4 10.3 1.9 1 23 350 372 350 372 0.98 14 16 5e-06 0.0004 22.2 0.4 1 23 378 400 378 400 0.98 15 16 0.0006 0.048 15.7 0.5 1 23 406 428 406 428 0.96 16 16 2.5 2e+02 4.2 0.3 9 23 442 456 435 456 0.93
Sequence Information
- Coding Sequence
- ATGGTGCCACGACAAAGACGTTTTAAGTGTGAAATGTGCGGCAAGTGTTTTAAACTAAACTGTAACCTTACCACTCACATGCTTGTCCACACAGGTGAGAAACCACACGTTTGCAAAGTTTGCAAGAAAGTGTTCGCACAATTAGGAAATTTAAACAGGCACTTGTCGACGCACACCAATGGAAGCTCTATCAAGCCAACCCCATACAGGTGTGAAATTTGTCAGAAAGCGTTCACATCGCGTTGTAGTTTAACGAATCACGTTAGGATACATACGGGAGAAAGGCCGCACAAGTGTGAGATTTGCAAGAAAGCGTTCGTGCAGAAATGCAATTTAAAAAGACATTTGCTGACACACACCAAACAAACTTTACACAAATGTGAAGTTTGCCAAAAAACATTATCTGGTCGTTCCGCTTTAAAGGCACATATCAGAACGCACACAGGAGAAAGGCCTTACAAGTGTGACATTTGCAAGAAAGTGTTCATACAGAAAAACGCTTTAAAGAAGCACTCGCTGACACACACCACACCAAAATTACGAAAATtatacaaatgtgaaatttgccaaagaGTGCTGCTCTCTAGTAGTTTAACAGTACATGccaggatgcacacaagagaaAAACCTTATGAGTGTGAGATCTGCAAGAAAGCATTTGTGCAGATGATCAGTTTAAAGAGGCATAAAATGACACACGCACACCCCAAagtaaaatgtgaaatttgccaaagaGTGCTCTCTAGTAGTTCCGCTTTAACGGCACATGCCGCGATGCACAGAAGAGAAATGCCTTACAAATGTGTAATTTGCAAGAAATCATTCGAGCAGATGATCACTTTAAAAATGCATTTGCCGAACCACACCGGACTAAAAttacacaaatgtgaaatttgccaaaaagcgcTTTCTTGTCGTTCCGCTTTATTGGTTcatgttaggactcacacaggagaGAAGCCTTACGAGTGTGAGATTTGCAAGAAAGCGTTCCGACAGTCAAACACTTTAAAGGAGCACTTGTTGACACACTTGAAACTAAAAatacacaaatgtgaaatttgccaacaAGCGCTTTCTTGTCGTTCCGCTTTATTGGTTcatgttaggactcacacaggagaGAAGCCTTACGTGTGTGAGATTTGCAAGAAAGCATTCAGGTACTTGGTCACTTTAAAGAGGCATTTGTTGATACACACCGGGGTCAAGTcatacaagtgtgaaatttgtaataaaGCATTCAACGGCGTGAATAAATTAAAGATACACTTGTTTGAACATACTAATAAAAATCCATTTTTCTGTAAGATTCGCAGTATTTTCTTTAAGTCGGAATGGTATTTGAGGGAGCATAAAAGGATGCACAAAGCAGAAAACGTCGGGGAAGTACAAGATGAACAAGTCGATGTTAATGTAAAGTTGGAAGAAAATATAACGGGCGAAGAAGAAAAAGCAATTGTCGGATCTGAAAATTTGGAAACGCTCATCAAAATTGAGGAACATGaggtgaaaattgaaaatagtaTTGACATAAAagtagaaaatattttagacgCAGAAGAAATTTCTGGAAGTTCTGCAAAACTTTGCAAAAATGAGTAG
- Protein Sequence
- MVPRQRRFKCEMCGKCFKLNCNLTTHMLVHTGEKPHVCKVCKKVFAQLGNLNRHLSTHTNGSSIKPTPYRCEICQKAFTSRCSLTNHVRIHTGERPHKCEICKKAFVQKCNLKRHLLTHTKQTLHKCEVCQKTLSGRSALKAHIRTHTGERPYKCDICKKVFIQKNALKKHSLTHTTPKLRKLYKCEICQRVLLSSSLTVHARMHTREKPYECEICKKAFVQMISLKRHKMTHAHPKVKCEICQRVLSSSSALTAHAAMHRREMPYKCVICKKSFEQMITLKMHLPNHTGLKLHKCEICQKALSCRSALLVHVRTHTGEKPYECEICKKAFRQSNTLKEHLLTHLKLKIHKCEICQQALSCRSALLVHVRTHTGEKPYVCEICKKAFRYLVTLKRHLLIHTGVKSYKCEICNKAFNGVNKLKIHLFEHTNKNPFFCKIRSIFFKSEWYLREHKRMHKAENVGEVQDEQVDVNVKLEENITGEEEKAIVGSENLETLIKIEEHEVKIENSIDIKVENILDAEEISGSSAKLCKNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01537486;
- 90% Identity
- iTF_01537486;
- 80% Identity
- iTF_01537486;