Xruf046429.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- -
- Assembly
- GCA_963966045.2
- Location
- OZ014503.1:24271028-24272413[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.044 71 5.2 0.2 23 45 8 30 4 33 0.89 2 14 0.00087 1.4 10.7 0.6 21 46 34 59 31 66 0.86 3 14 2 3.2e+03 -0.1 0.1 21 43 62 84 58 89 0.86 4 14 0.015 24 6.7 0.1 21 44 90 113 80 118 0.87 5 14 0.23 3.8e+02 2.9 0.1 24 44 121 141 114 145 0.87 6 14 1 1.7e+03 0.8 0.0 21 43 146 168 141 176 0.80 7 14 0.22 3.6e+02 2.9 0.1 21 44 207 230 202 233 0.88 8 14 0.00075 1.2 10.9 0.4 8 44 221 258 216 263 0.74 9 14 0.064 1e+02 4.7 0.0 22 44 264 286 260 290 0.87 10 14 0.019 31 6.3 0.4 22 44 292 314 287 319 0.89 11 14 0.034 54 5.6 0.1 22 45 320 343 317 347 0.89 12 14 0.046 74 5.1 0.0 21 44 347 370 343 374 0.90 13 14 0.00026 0.42 12.3 0.1 21 46 375 400 371 406 0.87 14 14 0.038 61 5.4 0.2 21 48 403 430 399 434 0.92
Sequence Information
- Coding Sequence
- ATGGCATGCCACACGGATAAGAGGCCTTATGCTTGTGAAATATGTAAGAAAGCATTTCGTCAGAAGACTCATCTAAATGCTCATATGAAGTGCCATACCGATGAGAGACCTTACACCTGCGAATTGTGTAACAAGTCCTTCCGTCAACAATCAAACTTAAATAGTCACGTGAGGTGCCACATGAAAGAGAAACCCTACAAATGTGGCATGTGTGATAAAGGATTTCGTCGGCGCAGCTCCCTAAAGAATCATACGATGAGCCACACAGGCGAGAGACCCTATACGTGTGAAATATGTGACAAAACATTCAGTCAACAAAAGTATCTAAATGCTCATATGTTGTGCCACACAGATGAGAGGCGCTACAAATGTGGCatatgtgataaagcatttcgtCAGCCCAGTTCTCTAAAGAATCATATGGTGAGCCACACAGATGAGAGGCCCTACATGTGCAAAATATGCAACAAAGGCTTTCGGAAGAAAGGGATTCTAACTGGTCATATGATGAGCCACACAAACGAGAAAAcctacaaatgtgaaatgtgtATGAAAGCATTCCAACTGCCACAAACGTTAAACAAACATATGATGAGCCACATCAACAATAGTCACATAAAAGAAagaccccacaaatgtgaaatatgtaaaaaggcATTCCGACACCCCAGCGTTCTAAAAAATCATATGTTTAGCCACTCGGATGAGAGACCCCACATTTGTGCTATATGTAACAAAGCTTTTCGTCAGAAAGTGAATCTAATCGGTCACATGTTGTGCCACACAGACGAAAAATCTTATAAATGTGACATATGTGATAAAGCATTCCGCCAGCCACAAACTCTAAAGAATCACATGATGGTTCACACAGACGATAGACCCTACAAATGCAATAAATGTAGAAAAGCGTTCCGTCAGCTGCAAAGTCTAAGGAAACATCTGCTGACCCATATGGACGAAAGGCCCTAcgtatgtaaaatatgtaacaaAGCATTTCGTCAGAAAGGGACTCTAACAGGTCATATGAAGTGCCACTCAAAGGAGAAGCCCTACAAATGTGGCatatgtgataaagcatttcaacgATCAAACACTTTAAAGCATCACATGTTCAACCACACAGGCGAGAGGccatacaaatgtgaaatatgtaaaacggCGTACCGACAATCCCAAAGTCTAAAAGATCACATGACGTATCATACCGGTGAAAAACCTCATCAGTGCCAGTTATGTGCGAAAAAATTTCATGTGAAAGGTGAACTCAAGAGGCATTTCGATAGGCGTCATAATGGTGACAGAAAATCTGCTGTGTTGGAAGAAGCAATTCACGTTGATCAAGGTTTAAAGAAAGAAAATACTTTTGACTTAAAGTTCAATGTATAA
- Protein Sequence
- MACHTDKRPYACEICKKAFRQKTHLNAHMKCHTDERPYTCELCNKSFRQQSNLNSHVRCHMKEKPYKCGMCDKGFRRRSSLKNHTMSHTGERPYTCEICDKTFSQQKYLNAHMLCHTDERRYKCGICDKAFRQPSSLKNHMVSHTDERPYMCKICNKGFRKKGILTGHMMSHTNEKTYKCEMCMKAFQLPQTLNKHMMSHINNSHIKERPHKCEICKKAFRHPSVLKNHMFSHSDERPHICAICNKAFRQKVNLIGHMLCHTDEKSYKCDICDKAFRQPQTLKNHMMVHTDDRPYKCNKCRKAFRQLQSLRKHLLTHMDERPYVCKICNKAFRQKGTLTGHMKCHSKEKPYKCGICDKAFQRSNTLKHHMFNHTGERPYKCEICKTAYRQSQSLKDHMTYHTGEKPHQCQLCAKKFHVKGELKRHFDRRHNGDRKSAVLEEAIHVDQGLKKENTFDLKFNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01536852;
- 90% Identity
- iTF_01536852;
- 80% Identity
- iTF_01536852;