Xruf043557.1
Basic Information
- Insect
- Xestobium rufovillosum
- Gene Symbol
- -
- Assembly
- GCA_963966045.2
- Location
- OZ014502.1:26714052-26715455[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.53 8.5e+02 1.7 0.3 26 48 102 124 97 128 0.82 2 12 0.00044 0.72 11.6 0.1 23 44 127 148 121 152 0.90 3 12 0.0012 2 10.2 0.1 21 44 153 176 150 180 0.91 4 12 4.7e-05 0.076 14.7 0.4 21 45 181 205 178 214 0.90 5 12 0.27 4.4e+02 2.6 2.1 21 50 218 246 205 249 0.78 6 12 0.042 68 5.3 1.0 7 44 232 269 226 273 0.83 7 12 0.37 6e+02 2.2 0.1 21 44 274 297 270 302 0.87 8 12 0.082 1.3e+02 4.3 0.1 26 47 307 328 299 334 0.82 9 12 0.00089 1.4 10.6 0.1 22 44 331 353 326 356 0.91 10 12 0.13 2.1e+02 3.7 0.0 21 44 358 381 354 384 0.89 11 12 0.00034 0.54 12.0 0.1 21 44 386 409 382 415 0.91 12 12 2 3.3e+03 -0.1 0.1 21 44 414 437 410 440 0.78
Sequence Information
- Coding Sequence
- ATGTCTCTTTCTGAACGAAGCGAAGCATCAGTTTTTTATGTAGAGGACAAAAAGATAACCGAGTTCCGTTCAGAAATGTCAGTTTGCGATCCAGTTAAAGTGGAATTAAAAAATGATTTAAGCGACATAGATAtagaagaaaaatttattgtagacGAAGGAGGGTCGGAATTGAAAAATGAACCAGAGGAAACTGTTAAACAAAAAAGGAAATTTAAGTGTTCCGAGTGCCCGAAAGTGTATGTCAGCAAAGGTGCgttgaaattgcattttttgtcGATACACGTGGGCGATAAAATGCACAAGTGCGAGATATGTAGTAAAACGTTCCATTGGCCGCATGTCCTGAGACGTCATATGAAGTGTCACGCGAATAGGAAACCCCACAAGTGTGTAATTTGTGAAAAAGTGTTTCGTGATTCCGAAAATCTAAAGTACCACATGATGTGTCACACGGGGgagaagcctcacaaatgtgactTATGCGATAAGTTGTTTCGGCACTCTCAAAACCTGAAGACTCACATgctgtgccacacaggcgagaaacctcacaaatgcgaaatttgtaaaaaagaGTTCCGTTACTCCCGAACTCTCAAGCGTCACTTGACGTGTCACGATGATAAGAAGCGTCAAGTGACACGTCACGATGAGAAGCGCCATAAGTGCGAAACGtgtaaaaaagcgttctctcatcCACAGAATCTGAAGAGGCATATGAAGCGTCACACGGcggagaagccccacaaatgtgaagttTGCAAAAAAGGCTTCCCTTATTTACAAAGCCTGAAGCGTCACATGATGTCTCACACGAACGAGTGGCCCCATAAATGCGAAATTTGTAACAAAGGCTTTTGTCACCTCCAGAATCTGAAGCACCACGTGATGGTCCACGCGGACCAGAGATCCCACAAGTGCGACGTCTGCAAAAAAGTGTTCCGTCAGCCCGCGCATCTAACCGATCAcatgaagtgccacacagacgacaagcctcacaaatgcgaaatttgtaACAAAATGTTTAGTCGTTCCCGAAATTTAAAAACGCACATGATCAGTCACACCgacgagaagccccacaaatgtgaaatatgcgaTAGCACATTCGGTTGCTCCTCGAACCTAATCGTTCACATGTTTTGTCACACGGGAGAGAAGCCGCATAGATGTGACATTTGTAAGAAAGATTTCCGTTACTCCCAAGACCTGAAAAGACATTTGTTGTCCCACACCAACGAGATACCCAACCAATGCCACATTTGCAAGAACGGGTTCAGTTCCAAACAATATTTAAAGATTCATTTAATGGGCCATgcaaaagaaaaacaagattTGTAA
- Protein Sequence
- MSLSERSEASVFYVEDKKITEFRSEMSVCDPVKVELKNDLSDIDIEEKFIVDEGGSELKNEPEETVKQKRKFKCSECPKVYVSKGALKLHFLSIHVGDKMHKCEICSKTFHWPHVLRRHMKCHANRKPHKCVICEKVFRDSENLKYHMMCHTGEKPHKCDLCDKLFRHSQNLKTHMLCHTGEKPHKCEICKKEFRYSRTLKRHLTCHDDKKRQVTRHDEKRHKCETCKKAFSHPQNLKRHMKRHTAEKPHKCEVCKKGFPYLQSLKRHMMSHTNEWPHKCEICNKGFCHLQNLKHHVMVHADQRSHKCDVCKKVFRQPAHLTDHMKCHTDDKPHKCEICNKMFSRSRNLKTHMISHTDEKPHKCEICDSTFGCSSNLIVHMFCHTGEKPHRCDICKKDFRYSQDLKRHLLSHTNEIPNQCHICKNGFSSKQYLKIHLMGHAKEKQDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01536925;
- 90% Identity
- iTF_01536925;
- 80% Identity
- iTF_01536925;