Xruf046430.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xestobium rufovillosum
Gene Symbol
-
Assembly
GCA_963966045.2
Location
OZ014503.1:24272549-24279586[+]

Transcription Factor Domain

TF Family
zf-GAGA
Domain
zf-GAGA domain
PFAM
PF09237
TF Group
Zinc-Coordinating Group
Description
Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 31 0.82 1.3e+03 1.1 0.1 26 44 23 41 17 44 0.90
2 31 0.069 1.1e+02 4.6 0.1 22 44 46 68 42 72 0.90
3 31 0.0012 1.9 10.2 0.1 21 45 73 97 69 106 0.84
4 31 0.95 1.5e+03 0.9 0.0 23 44 103 124 99 128 0.90
5 31 0.00039 0.62 11.8 0.3 21 48 129 156 125 161 0.87
6 31 0.13 2.1e+02 3.7 0.6 5 44 247 286 244 290 0.84
7 31 0.43 6.9e+02 2.0 0.2 21 44 291 314 287 324 0.88
8 31 1.6 2.6e+03 0.2 0.1 21 44 319 342 315 350 0.88
9 31 3.6 5.8e+03 -0.9 0.1 21 44 347 370 328 375 0.79
10 31 0.75 1.2e+03 1.2 0.1 21 32 375 386 371 398 0.79
11 31 0.049 79 5.0 0.1 21 44 403 426 399 433 0.90
12 31 4.1 6.6e+03 -1.1 0.1 21 35 459 473 450 486 0.75
13 31 0.017 27 6.5 0.1 25 44 491 510 484 513 0.88
14 31 1.5 2.5e+03 0.2 0.3 22 44 516 538 512 542 0.86
15 31 0.0033 5.3 8.8 0.1 21 43 543 565 540 574 0.89
16 31 0.061 98 4.7 0.1 21 44 589 612 584 618 0.89
17 31 0.63 1e+03 1.5 0.1 25 44 621 640 615 648 0.87
18 31 1.1 1.8e+03 0.7 0.0 19 43 642 667 628 674 0.72
19 31 7.4 1.2e+04 -1.9 0.0 22 44 707 729 704 730 0.89
20 31 0.0052 8.3 8.2 0.4 20 44 733 757 715 764 0.81
21 31 0.18 2.9e+02 3.2 0.0 22 45 763 786 760 792 0.87
22 31 0.051 82 5.0 0.7 22 46 791 814 787 823 0.86
23 31 0.62 9.9e+02 1.5 0.1 22 38 819 835 815 842 0.86
24 31 0.12 1.9e+02 3.9 0.0 21 44 846 869 838 873 0.89
25 31 0.00069 1.1 11.0 0.2 21 47 874 900 871 907 0.86
26 31 0.85 1.4e+03 1.1 0.1 21 48 902 929 899 932 0.88
27 31 0.96 1.5e+03 0.9 0.1 26 44 973 991 968 994 0.91
28 31 0.069 1.1e+02 4.6 0.1 22 44 996 1018 992 1022 0.90
29 31 0.0087 14 7.4 0.1 21 45 1023 1047 1019 1055 0.85
30 31 0.99 1.6e+03 0.9 0.0 23 44 1053 1074 1050 1078 0.90
31 31 0.00039 0.62 11.8 0.3 21 48 1079 1106 1075 1111 0.87

Sequence Information

Coding Sequence
ATGTTTAGTGTTCAGTTGTCTTTGCAGGGGGAGATTTTTCATAACGATGAGACAAATGATGAATTCTCTTGCGAACTGTGCGGAAAAGCATTCCGTCAACGGAGGTATCTTAATGGTCATTTGGCGGGCCACATAGAGAGGCCCTTCTCCTGCGAAATATGTAACAAATCATACCGTCAGGAAATGCATCTAAAAGGTCACATGACGTGCCATACAGGCGAAAAGCCGTACACCTGCCACATATGTTACAAAGGATTCAGCCAGCAAAAGTATCTAAATAGTCACATGATGTGCCACGTAGAAGTGAaaccgttcaaatgtgaaatatgcggAAGAATGTTCGGTTGGTCCTATAGTTTGAAGCGCCACATGGTGACCCACACCaacgaaaagccccacaaatgtgaaatatgcaatACGGCGTACCGGGAGTCCAGAAGTTTAAAGAGTCATTTCAGTAAATATCATAGAAAAGAGCCGGATTCGTCAAGACCTGATTCAGAAACTGTCGTATTGGAAGAAGAGATTAAAGTTGAAGAAGTTAAGACACATATTGTTTCGAATACAAATAACGATGAAATGAAAAATGAATCAAATCTTCAAAGAAAAAATGAGTACAGCACAAGGGAGTTCAAGTGTCCTGATTGTCCGAAAGTCTTCGCCCGCAATTTCTCGTTAAAATACCACGCAATATTACATACAGGAAAGAGACCTTACGAATGTGATCAATGTGAGAAAGCGTTCAAGCATCCCAACACTTTAAAGAATCACAAGATTACTCACACTGACAAGAGACCGCACATATGCTTAGTGTGTAATAAAACGTTCCGTCAGAAACCGCATCTGAATACTCATATGAGGTGCCATACGGATGAGAGACCGTACAAATGTGAACTATGTGATGAAGCATTCCGTCAACCCAACCCTTTAAAGATGCATATGTTGAGCCACACGAATGAGAGGCCCTACATCTGCGAAGTGTGTAAGAAAACGTTCCATCAGCCCAGCTTTTTAAAGAATCACATGATCTGCCACACGGACGAGAGACCCTTCATATGCGAACTGTGTAACAAAACATTCCGCTATAAATCGGAACTAAATTATCATGTGATGTGCCACACGGATGAGAGGCCCCACACTTGCGAAATCTGTAAAAAAACTTTCTATAAACTCAGCTCTCTGACACAGCATAAGATTTGCCACACGGATGAGAGGCCCTACACCTGTGAAGTATGCAACAAAGCATATCGTTATAAATGGAATCTAAGTAATCATATGTTGTGCCACACGGATGTGAAGTTCCACGCCTGCAAAATATGTGACAAAGCATTCGTTCAGCTCAACTATCTAAAGAAGCACATGATAAGCCATACGGATGAGagaccccacaaatgtgaaatatgcaacAAAGCATTCCACTATCAGTTTACTCTAAATAATCATATGATGTGCCATACGGAAGAGGGGCACCACATTtgtgaaatatgtaataatGTGTTTAACCAGTCCAGCTCGTTAAAGAAGCATATAATGTGCCACCCAGATGAGAGACCCTACAGTTGCGAAATATGTGACAAAGCATTCCGTTACAAATGCACTCTAAATGAGCACATGATGTGCCACACGGATGAGAAACCCCACACTTGCAACATTTGTAACAAAGCTTTCTTTCAACTCCGCTCTCTGAAGAAGCATAAGATTAGCCACACAGACAATAAGCCCTACATGTGTGAACTCTCTAAGGAATCATACGATGAGCCACACAGGGAGAGACCCTATACGTGTGAAATATGTGACAAAACATTCAGTCAACAAAAGTATCTAAATGCTCATATGTTGTGCCACACAGACGAGAGGCGCTACAAATGTGGCatatgtgataaagcatttcgtCAGCCCAGTTCTCTAAAGAATCATATGGTGAGCCACTCAGATGAGAGGCCCTACATGTGCAAAATATGCAACAAAGGCTTTCGGAAGAAAGGGATTCTAACTGTCCATATGATGAGCCATACAAACAAGAGAAcctacaaatgtgaaatgtgtATGAAAGCATTCCGACTGCCACAAACGTTAAACAAGCATATGATGAGCCACATCAACAATAGTCACATAAAAGAAAGACCCCACAAATCTGAAATATGTAAAATGGCATTCCGACACCCCAGCGTTCTAAGAAATCATATGTTTAGCCACTCGGATGAGAGACCCCACATTTGTGCTATATGTAACAAAGCTTTTCGTCAGAAAGTGAATCTAATCGGTCACATGTTGTGCCACACACACGAAAAATCTTATAAATGTGACATATGTGATAAAGCATTCCGCCAGCCACAAACTCTAAAGAATCATATGATGGTTCACACAGACGATAGACCCTACAAATGCAATAAATGTAGAAAAGCGTTCCGTCAGCTGCAAAGTCTAAGGAAACATCTGCTGACCCATATGGACGAAAGGCCCTAcgtatgtaaaatatgtaacaaAGCATTTCGTCAGAAAGGGACTCTAACAGGTCTTATGAAGTGCCACTCAAAGGAGAAGCCCTACAAATGTGGCatatgtgataaagcatttcaacgATCAAACACTTTAAAGCATCACATGTTCAACCACACAGGCGAGAGgccctacaaatgtgaaatatgtaaaacggCGTACCGACAATCCCAAAGTCTAAAGGATCACATGACGTATCATACCGGTGAAAAACCTCATCAGTGCCAGTTATGTGCGAAAAAATTTCATGTGAAAGGTGAACTCAAGAGGCATTTCAATAGGCATCATAATGGTGACAGAAAACTTGCTGTATTGGAAGAAGCAATTCACGTTGATCGTGGTTTAAAGAAAGAAAATACTCTTGACTTAAAGTTCAATGCGGAGATTTTTCATAACGATGAGACAAATTATGAATTCTCTTGTGAACTGTGCGGAAAAGCATTCCGTCAACGGAGGTACCTTAATGGTCATTTGGCGGGCCACATAGAGAGGCCCTTCTCCTGCGAAATATGTAACAAATCATACCGTCAGGAAATGCATCTAAAAGGTCACATGACGTGCCATACAGGCGAAAAGCCGTACGCCTGCCACATATGTTACAAAGGATTCAGCCAGCAAAAGTATCTAAATAGTCACATGATGTGCCACGTAGAAGTGAaaccgttcaaatgtgaaatatgcggAAGAATGTTCGGTTGGTCCTATAGTTTGAAGCGCCACATGGTGACCCACACCaacgaaaagccccacaaatgtgaaatatgcaatACCGCGTACCGGGAGTCCAGAAGTTTAAAGAGTCATTTCAGTAAATATCATAGAAAAGAGCCGGATTCGTCAAGACCTGATTCAGAAACTGTCGTATTGGAAGAAGAGATTAAAGTTGAGGAAGTTAAGGTTGAAATTTCGCTGCCGTAA
Protein Sequence
MFSVQLSLQGEIFHNDETNDEFSCELCGKAFRQRRYLNGHLAGHIERPFSCEICNKSYRQEMHLKGHMTCHTGEKPYTCHICYKGFSQQKYLNSHMMCHVEVKPFKCEICGRMFGWSYSLKRHMVTHTNEKPHKCEICNTAYRESRSLKSHFSKYHRKEPDSSRPDSETVVLEEEIKVEEVKTHIVSNTNNDEMKNESNLQRKNEYSTREFKCPDCPKVFARNFSLKYHAILHTGKRPYECDQCEKAFKHPNTLKNHKITHTDKRPHICLVCNKTFRQKPHLNTHMRCHTDERPYKCELCDEAFRQPNPLKMHMLSHTNERPYICEVCKKTFHQPSFLKNHMICHTDERPFICELCNKTFRYKSELNYHVMCHTDERPHTCEICKKTFYKLSSLTQHKICHTDERPYTCEVCNKAYRYKWNLSNHMLCHTDVKFHACKICDKAFVQLNYLKKHMISHTDERPHKCEICNKAFHYQFTLNNHMMCHTEEGHHICEICNNVFNQSSSLKKHIMCHPDERPYSCEICDKAFRYKCTLNEHMMCHTDEKPHTCNICNKAFFQLRSLKKHKISHTDNKPYMCELSKESYDEPHRERPYTCEICDKTFSQQKYLNAHMLCHTDERRYKCGICDKAFRQPSSLKNHMVSHSDERPYMCKICNKGFRKKGILTVHMMSHTNKRTYKCEMCMKAFRLPQTLNKHMMSHINNSHIKERPHKSEICKMAFRHPSVLRNHMFSHSDERPHICAICNKAFRQKVNLIGHMLCHTHEKSYKCDICDKAFRQPQTLKNHMMVHTDDRPYKCNKCRKAFRQLQSLRKHLLTHMDERPYVCKICNKAFRQKGTLTGLMKCHSKEKPYKCGICDKAFQRSNTLKHHMFNHTGERPYKCEICKTAYRQSQSLKDHMTYHTGEKPHQCQLCAKKFHVKGELKRHFNRHHNGDRKLAVLEEAIHVDRGLKKENTLDLKFNAEIFHNDETNYEFSCELCGKAFRQRRYLNGHLAGHIERPFSCEICNKSYRQEMHLKGHMTCHTGEKPYACHICYKGFSQQKYLNSHMMCHVEVKPFKCEICGRMFGWSYSLKRHMVTHTNEKPHKCEICNTAYRESRSLKSHFSKYHRKEPDSSRPDSETVVLEEEIKVEEVKVEISLP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01536835;
90% Identity
iTF_01536835;
80% Identity
iTF_01536835;