Basic Information

Insect: Xestobium rufovillosum
Gene Symbol: -
Assembly: GCA_963966045.2
Location: OZ014502.1:26394867-26396766[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.13 2e+02 3.7 0.2 21 43 88 110 80 115 0.87

2 17 0.018 29 6.4 0.1 21 44 116 139 108 143 0.90

3 17 0.037 59 5.5 0.1 21 43 144 166 140 171 0.91

4 17 0.0012 2 10.2 0.1 20 48 171 198 168 200 0.90

5 17 0.0073 12 7.7 0.1 18 45 197 224 195 227 0.88

6 17 0.041 66 5.3 0.1 22 46 229 253 225 259 0.90

7 17 0.19 3e+02 3.2 0.3 22 44 257 279 254 283 0.89

8 17 0.0033 5.2 8.8 0.0 21 45 284 308 280 314 0.91

9 17 2.1 3.4e+03 -0.2 0.1 23 44 342 363 336 372 0.86

10 17 5.4 8.7e+03 -1.5 0.4 22 45 369 392 348 400 0.78

11 17 4 6.5e+03 -1.1 0.1 21 43 396 418 383 423 0.81

12 17 0.016 26 6.6 0.0 22 44 425 447 420 451 0.90

13 17 9.6e-05 0.15 13.7 0.0 21 44 452 475 448 479 0.91

14 17 0.00026 0.43 12.3 0.1 22 44 481 503 477 507 0.91

15 17 6.4e-05 0.1 14.3 0.4 21 44 508 531 504 535 0.92

16 17 0.00071 1.1 10.9 0.0 23 44 538 559 534 568 0.86

17 17 3 4.9e+03 -0.7 0.1 21 47 564 590 560 593 0.80

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.13	2e+02	3.7	0.2	21	43	88	110	80	115	0.87
2	17	0.018	29	6.4	0.1	21	44	116	139	108	143	0.90
3	17	0.037	59	5.5	0.1	21	43	144	166	140	171	0.91
4	17	0.0012	2	10.2	0.1	20	48	171	198	168	200	0.90
5	17	0.0073	12	7.7	0.1	18	45	197	224	195	227	0.88
6	17	0.041	66	5.3	0.1	22	46	229	253	225	259	0.90
7	17	0.19	3e+02	3.2	0.3	22	44	257	279	254	283	0.89
8	17	0.0033	5.2	8.8	0.0	21	45	284	308	280	314	0.91
9	17	2.1	3.4e+03	-0.2	0.1	23	44	342	363	336	372	0.86
10	17	5.4	8.7e+03	-1.5	0.4	22	45	369	392	348	400	0.78
11	17	4	6.5e+03	-1.1	0.1	21	43	396	418	383	423	0.81
12	17	0.016	26	6.6	0.0	22	44	425	447	420	451	0.90
13	17	9.6e-05	0.15	13.7	0.0	21	44	452	475	448	479	0.91
14	17	0.00026	0.43	12.3	0.1	22	44	481	503	477	507	0.91
15	17	6.4e-05	0.1	14.3	0.4	21	44	508	531	504	535	0.92
16	17	0.00071	1.1	10.9	0.0	23	44	538	559	534	568	0.86
17	17	3	4.9e+03	-0.7	0.1	21	47	564	590	560	593	0.80

Sequence Information

Coding Sequence: ATGTCTCTGTCTGATCCAGTTAAAACTGAATCAAAAAATGATTGGAGCGACATAGAAGtggaagaaaaatttattatagaTAAGGAGGAGtcagaaatttatgaaaaaaatgataATAAGGCGGAGAATTCAGTTAATGAAAATGAACAGAAGCAAACTGTTAAGAAAAGAGGAAGCGACAAAAATGCTTTCAAATGTCCCGATTGTCCGAAAGTGTGCACCACGACCTACGGGTTAAAAATCCATTCGACGATACACGGGAGTGAGAAACCTCACAAATGCGAGATATGCCAAAAACGGTTCCGTCTTGCGCAATATCTAAAGATCCACACGATGTCCCATACAGGCGAGAGGCCCTATAAGTGCGAGATTTGTAAAAAGGGGTTCCGCATGTCCCAACATCTAAAGAATCACATGACGTGCCACACGAATGAAAAACCGTACGTGTGcgaaatttgtaaaaaaggtTTCAGCCAGCCGCAAAATCTAAAGACCCACGCGATGTGCCACACGTCCGAGAAACCGTACGAATGcgaaatttgtaaaaaagggTTCCGTCAGGCCCAAACTTTAAAGTGTCACATGATGCGTCACACGGACGAGAAGCCatacaaatgcgaaatttgtgAAAAAGCGTTTCGTCAGTCCGGACTTCTTAGTTACCatatgaagtgccacacagatgAGACACCTTACAAATGCGACGTTTGTAAGAAAAGTTTTCGTCATTTACAAAATCTGAACAGTCACTTCGAGTGTCACTCAAAGGAGAAGCACTGCATATGCGAAATATGTAAGAGAACATTCAGTCACCCAAGAAATCTAAAGGCCCATATGATGGGCCACACGGGTGAGCGACCGTACGAATGCGAAATTTGTAATAGTGGGTTCCGTAATTCCAAAAGCCTAAAGGTTCACTTGGCGAGCCACACAAACCAGAAGCTATACAattgtgaaatatgtaaaaaccGATTCTGTTATTGCCCCAATCTAAAGACTTATTTGACGAGCCACCCAGACAAGAAACCatataaatgtgaaatttgtacaaGAGCCTTCTCTCTGCCAAAAACTCTAAGAGCCCACATGGTCTGCCACACAGGTGATAGACCCTACAAATGTGATATTTGTAAAAATGGGTTCCCCACGCCCCAGCGTCTAAAGAATCACATGAAGCATCACACAGGAGAGAAACCCTACAAATGTAAACTCTGTGAAAAAGAGTTCCGCCACGCCTTGCATCTAAAGATTCACGCGGCGACCCACACGGATGACAAACCCTACGAATGCAAGATTTGTGAAAAGGGTTTCCGTCAATCCAATTACCTGAAGAGTCACATGATGAGTCACACTGGGGAAAAGCCctacaaatgcgaaatttgcaataaaggcTTCCGTCAATCCCAAAATCTAAAAAGTCACATGATGTGCCATACTGATGAAACGCCCTATGAGTGCGAGATTTGTAAAAAAGGGTTCCGTCAGTCGCAAAATCTAAAAAGTCACATGATGTGTCACACGGAcgaaaaaccccacaaatgcAGAATTTGCGAAAAAGAGTTGCGTTCTTCCCGAAATTTGAGGCTTCACATGATGGGTCACACGGGCCAGATGCCCTACGAATGCGAGATTTGTAAGAAAGGTTTCCGTCAGTCGCAGAATCTAAAGAGTCACATGGTGAGCCACACGGGCGAGAAACCACATCAGTGCCAGTTGTGTACGACGAGTTTTCTTTGGAAATGCAGTCTCTACAAGCATCTCAAAAAATATCATAACGTTGAGGAAACTGAAAGTGATGAGAGCGGAAAACGCACGAAAAAAGAAACTCAAGTTCAGGAAATTTAA
Protein Sequence: MSLSDPVKTESKNDWSDIEVEEKFIIDKEESEIYEKNDNKAENSVNENEQKQTVKKRGSDKNAFKCPDCPKVCTTTYGLKIHSTIHGSEKPHKCEICQKRFRLAQYLKIHTMSHTGERPYKCEICKKGFRMSQHLKNHMTCHTNEKPYVCEICKKGFSQPQNLKTHAMCHTSEKPYECEICKKGFRQAQTLKCHMMRHTDEKPYKCEICEKAFRQSGLLSYHMKCHTDETPYKCDVCKKSFRHLQNLNSHFECHSKEKHCICEICKRTFSHPRNLKAHMMGHTGERPYECEICNSGFRNSKSLKVHLASHTNQKLYNCEICKNRFCYCPNLKTYLTSHPDKKPYKCEICTRAFSLPKTLRAHMVCHTGDRPYKCDICKNGFPTPQRLKNHMKHHTGEKPYKCKLCEKEFRHALHLKIHAATHTDDKPYECKICEKGFRQSNYLKSHMMSHTGEKPYKCEICNKGFRQSQNLKSHMMCHTDETPYECEICKKGFRQSQNLKSHMMCHTDEKPHKCRICEKELRSSRNLRLHMMGHTGQMPYECEICKKGFRQSQNLKSHMVSHTGEKPHQCQLCTTSFLWKCSLYKHLKKYHNVEETESDESGKRTKKETQVQEI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01536868;
90% Identity: iTF_01536868;
80% Identity: iTF_01536868;