Basic Information

Insect: Xestobium rufovillosum
Gene Symbol: -
Assembly: GCA_963966045.2
Location: OZ014502.1:26394867-26396766[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00012 0.0098 17.8 1.3 1 23 64 86 64 86 0.96

2 17 0.00036 0.029 16.3 3.0 1 23 92 114 92 114 0.98

3 17 0.00073 0.059 15.4 5.7 1 20 120 139 120 142 0.96

4 17 5.8e-05 0.0047 18.8 1.4 1 20 148 167 148 170 0.94

5 17 0.00032 0.026 16.5 2.9 1 23 176 198 176 198 0.98

6 17 0.00012 0.01 17.8 2.5 1 21 204 224 204 226 0.96

7 17 0.002 0.16 14.0 6.2 1 19 232 250 232 254 0.95

8 17 5.3e-06 0.00042 22.1 3.0 2 23 261 282 260 282 0.95

9 17 7.2e-05 0.0058 18.6 0.3 1 23 288 310 288 310 0.98

10 17 0.00027 0.021 16.8 1.2 1 20 344 363 344 366 0.97

11 17 0.00045 0.036 16.0 2.3 1 23 372 394 372 394 0.98

12 17 0.00027 0.021 16.8 3.2 1 23 400 422 400 422 0.98

13 17 1.1e-06 8.6e-05 24.3 1.4 1 23 428 450 428 450 0.98

14 17 1e-05 0.00083 21.2 3.6 1 21 456 476 456 478 0.96

15 17 2.3e-05 0.0018 20.1 3.1 1 21 484 504 484 506 0.95

16 17 0.00033 0.026 16.5 1.9 1 23 512 534 512 534 0.97

17 17 1e-06 8.4e-05 24.3 0.9 1 23 540 562 540 562 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00012	0.0098	17.8	1.3	1	23	64	86	64	86	0.96
2	17	0.00036	0.029	16.3	3.0	1	23	92	114	92	114	0.98
3	17	0.00073	0.059	15.4	5.7	1	20	120	139	120	142	0.96
4	17	5.8e-05	0.0047	18.8	1.4	1	20	148	167	148	170	0.94
5	17	0.00032	0.026	16.5	2.9	1	23	176	198	176	198	0.98
6	17	0.00012	0.01	17.8	2.5	1	21	204	224	204	226	0.96
7	17	0.002	0.16	14.0	6.2	1	19	232	250	232	254	0.95
8	17	5.3e-06	0.00042	22.1	3.0	2	23	261	282	260	282	0.95
9	17	7.2e-05	0.0058	18.6	0.3	1	23	288	310	288	310	0.98
10	17	0.00027	0.021	16.8	1.2	1	20	344	363	344	366	0.97
11	17	0.00045	0.036	16.0	2.3	1	23	372	394	372	394	0.98
12	17	0.00027	0.021	16.8	3.2	1	23	400	422	400	422	0.98
13	17	1.1e-06	8.6e-05	24.3	1.4	1	23	428	450	428	450	0.98
14	17	1e-05	0.00083	21.2	3.6	1	21	456	476	456	478	0.96
15	17	2.3e-05	0.0018	20.1	3.1	1	21	484	504	484	506	0.95
16	17	0.00033	0.026	16.5	1.9	1	23	512	534	512	534	0.97
17	17	1e-06	8.4e-05	24.3	0.9	1	23	540	562	540	562	0.98

Sequence Information

Coding Sequence: ATGTCTCTGTCTGATCCAGTTAAAACTGAATCAAAAAATGATTGGAGCGACATAGAAGtggaagaaaaatttattatagaTAAGGAGGAGtcagaaatttatgaaaaaaatgataATAAGGCGGAGAATTCAGTTAATGAAAATGAACAGAAGCAAACTGTTAAGAAAAGAGGAAGCGACAAAAATGCTTTCAAATGTCCCGATTGTCCGAAAGTGTGCACCACGACCTACGGGTTAAAAATCCATTCGACGATACACGGGAGTGAGAAACCTCACAAATGCGAGATATGCCAAAAACGGTTCCGTCTTGCGCAATATCTAAAGATCCACACGATGTCCCATACAGGCGAGAGGCCCTATAAGTGCGAGATTTGTAAAAAGGGGTTCCGCATGTCCCAACATCTAAAGAATCACATGACGTGCCACACGAATGAAAAACCGTACGTGTGcgaaatttgtaaaaaaggtTTCAGCCAGCCGCAAAATCTAAAGACCCACGCGATGTGCCACACGTCCGAGAAACCGTACGAATGcgaaatttgtaaaaaagggTTCCGTCAGGCCCAAACTTTAAAGTGTCACATGATGCGTCACACGGACGAGAAGCCatacaaatgcgaaatttgtgAAAAAGCGTTTCGTCAGTCCGGACTTCTTAGTTACCatatgaagtgccacacagatgAGACACCTTACAAATGCGACGTTTGTAAGAAAAGTTTTCGTCATTTACAAAATCTGAACAGTCACTTCGAGTGTCACTCAAAGGAGAAGCACTGCATATGCGAAATATGTAAGAGAACATTCAGTCACCCAAGAAATCTAAAGGCCCATATGATGGGCCACACGGGTGAGCGACCGTACGAATGCGAAATTTGTAATAGTGGGTTCCGTAATTCCAAAAGCCTAAAGGTTCACTTGGCGAGCCACACAAACCAGAAGCTATACAattgtgaaatatgtaaaaaccGATTCTGTTATTGCCCCAATCTAAAGACTTATTTGACGAGCCACCCAGACAAGAAACCatataaatgtgaaatttgtacaaGAGCCTTCTCTCTGCCAAAAACTCTAAGAGCCCACATGGTCTGCCACACAGGTGATAGACCCTACAAATGTGATATTTGTAAAAATGGGTTCCCCACGCCCCAGCGTCTAAAGAATCACATGAAGCATCACACAGGAGAGAAACCCTACAAATGTAAACTCTGTGAAAAAGAGTTCCGCCACGCCTTGCATCTAAAGATTCACGCGGCGACCCACACGGATGACAAACCCTACGAATGCAAGATTTGTGAAAAGGGTTTCCGTCAATCCAATTACCTGAAGAGTCACATGATGAGTCACACTGGGGAAAAGCCctacaaatgcgaaatttgcaataaaggcTTCCGTCAATCCCAAAATCTAAAAAGTCACATGATGTGCCATACTGATGAAACGCCCTATGAGTGCGAGATTTGTAAAAAAGGGTTCCGTCAGTCGCAAAATCTAAAAAGTCACATGATGTGTCACACGGAcgaaaaaccccacaaatgcAGAATTTGCGAAAAAGAGTTGCGTTCTTCCCGAAATTTGAGGCTTCACATGATGGGTCACACGGGCCAGATGCCCTACGAATGCGAGATTTGTAAGAAAGGTTTCCGTCAGTCGCAGAATCTAAAGAGTCACATGGTGAGCCACACGGGCGAGAAACCACATCAGTGCCAGTTGTGTACGACGAGTTTTCTTTGGAAATGCAGTCTCTACAAGCATCTCAAAAAATATCATAACGTTGAGGAAACTGAAAGTGATGAGAGCGGAAAACGCACGAAAAAAGAAACTCAAGTTCAGGAAATTTAA
Protein Sequence: MSLSDPVKTESKNDWSDIEVEEKFIIDKEESEIYEKNDNKAENSVNENEQKQTVKKRGSDKNAFKCPDCPKVCTTTYGLKIHSTIHGSEKPHKCEICQKRFRLAQYLKIHTMSHTGERPYKCEICKKGFRMSQHLKNHMTCHTNEKPYVCEICKKGFSQPQNLKTHAMCHTSEKPYECEICKKGFRQAQTLKCHMMRHTDEKPYKCEICEKAFRQSGLLSYHMKCHTDETPYKCDVCKKSFRHLQNLNSHFECHSKEKHCICEICKRTFSHPRNLKAHMMGHTGERPYECEICNSGFRNSKSLKVHLASHTNQKLYNCEICKNRFCYCPNLKTYLTSHPDKKPYKCEICTRAFSLPKTLRAHMVCHTGDRPYKCDICKNGFPTPQRLKNHMKHHTGEKPYKCKLCEKEFRHALHLKIHAATHTDDKPYECKICEKGFRQSNYLKSHMMSHTGEKPYKCEICNKGFRQSQNLKSHMMCHTDETPYECEICKKGFRQSQNLKSHMMCHTDEKPHKCRICEKELRSSRNLRLHMMGHTGQMPYECEICKKGFRQSQNLKSHMVSHTGEKPHQCQLCTTSFLWKCSLYKHLKKYHNVEETESDESGKRTKKETQVQEI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01537480;
90% Identity: iTF_01537480;
80% Identity: iTF_01537480;